CX289214

Overview
NameCX289214
Unique NameCX289214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig314 contig Ccv1_Contig314:356..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR1_PONAB (Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 43/136 (31.62%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVN-SMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNP 405
            TY++TKA+ E ++      L + I+RP+++ +++KEPFPGWI+         I  GKG +  +  ++  + DL+P DVVVN S+  A  +  N P + M+Y+  +   NP H+ ++       F +NP    +  P
Sbjct:  203 TYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRP 338          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR1_MOUSE (Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 43/136 (31.62%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVN-SMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNP 405
            TY++TKA+ E ++      L + I+RP+++ +++KEPFPGWI+         I  GKG +  +  ++  + DL+P DVVVN S+  A  +  N P + M+Y+  +   NP H+ ++       F +NP    +  P
Sbjct:  203 TYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRP 338          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR1_HUMAN (Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 43/136 (31.62%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVN-SMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNP 405
            TY++TKA+ E ++      L + I+RP+++ +++KEPFPGWI+         I  GKG +  +  ++  + DL+P DVVVN S+  A  +  N P + M+Y+  +   NP H+ ++       F +NP    +  P
Sbjct:  203 TYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRP 338          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR1_XENLA (Fatty acyl-CoA reductase 1 OS=Xenopus laevis GN=far1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.831e-18
Identity = 43/136 (31.62%), Postives = 73/136 (53.68%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVN-SMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNP 405
            TY +TKA+ E ++      L I I+RP+++ +++KEPFPGWI+         I  GKG +  +  ++  + DLIP DVVVN ++  A  +  N P + ++Y+  +   NP H+ ++       F +NP    +  P
Sbjct:  203 TYTYTKALAEYVVQQEGSKLNIAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNNAVADLIPVDVVVNTTLAAAWYSGVNRPKNMLVYNCTTGGTNPFHWGEVEYHVISTFKRNPLEQAFRRP 338          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR2_BOVIN (Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.076e-17
Identity = 46/136 (33.82%), Postives = 75/136 (55.15%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVN-SMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNP 405
            TY +TKA+GE+++     NL I IIRP+++ +T++EPFPGW++ L      +I  GKG +  +      + DLIPAD VVN ++ +      + P S ++YH  S   NP ++ ++       F K P+   +  P
Sbjct:  203 TYTYTKALGEVVVQQEGGNLNIAIIRPSIMGATWQEPFPGWVDNLNGPSGLIIAAGKGFLRSIRATPMAVADLIPADTVVNLTLAVGWYTAVHRPKSTLVYHCTSGNLNPCNWGKMGLQVLATFEKIPFERAFRRP 338          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR2_MOUSE (Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.397e-17
Identity = 42/136 (30.88%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVN-SMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNP 405
            TY +TKA+GE+++     NL + I+RP+++ +T++EPFPGW++ L      +I  GKG +  +      + D+IP D VVN ++ +      + P S +IYH  S   NP +++++         K P+   +  P
Sbjct:  203 TYTYTKALGEIVVQQESGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIATGKGFLRSIKATPMAVADVIPVDTVVNLTIAVGWYTAVHRPKSTLIYHSTSGNLNPCNWYKMGLQVLATIEKIPFESAFRRP 338          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR1_CHICK (Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.130e-17
Identity = 43/136 (31.62%), Postives = 72/136 (52.94%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVN-SMIMAMVANANNPSSQMIYHVGSSLRNPIHFFQIHEFAFHYFTKNPYIDKYGNP 405
            TY +TKA+ E ++      L   IIRP+++ +++KEPFPGWI+         I  GKG +  +  ++  + DL+P DVVVN ++  A  +  N P + M+Y+  +   NP H+ ++       F +NP    +  P
Sbjct:  203 TYTYTKALAEYVVQQEGARLNTAIIRPSIVGASWKEPFPGWIDNFNGPSGLFIAAGKGILRTMRASNGAVADLVPVDVVVNMTLAAAWYSGVNRPRNIMVYNCTTGGTNPFHWSEVEYHVISTFKRNPLEQAFRRP 338          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR1_DROME (Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.113e-14
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMAMVANANNPSSQ-MIYHVGSSLRNPIHFFQIHEFAFHYFTKNP 381
            TY FTKA+ E +L     NLP+ I+RP+++T++  EPF GW++        +    KG    +      + D++P D+V+N MI A    A   S+  +IY+  +  RNPI + +  + A     K+P
Sbjct:  318 TYTFTKALAEHMLLKEAGNLPVAIVRPSIVTASLNEPFAGWVDNFNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAAWRTATRKSNNLLIYNCCTGQRNPIIWSEFVKHAMTSVRKHP 445          
BLAST of CX289214 vs. ExPASy Swiss-Prot
Match: FACR3_DROME (Putative fatty acyl-CoA reductase CG8306 OS=Drosophila melanogaster GN=CG8306 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 41/119 (34.45%), Postives = 57/119 (47.90%), Query Frame = 1
Query:    1 TYVFTKAMGEMLLDHYKDNLPIIIIRPTMITSTYKEPFPGWIEGLRTIDVPLITYGKGKIDCLPVNSQTILDLIPADVVVNSMIMA-------MVANANNPSSQMIYHVGSSLRNPIHF 336
            TY FTK + E  + +     P  I+RP+MIT+ +KEP PGW           +   KG +  LP++   I+D IP DVVVN +I            N   P+   I+H+ SS   P  F
Sbjct:  206 TYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPGWTISKNGPQGFFMGASKGVLRRLPLDPSIIMDYIPIDVVVNGIITTGYYVNSLQAKNGGRPADLQIFHLTSSTYKPFRF 324          
The following BLAST results are available for this feature:
BLAST of CX289214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
FACR1_PONAB1.660e-1831.62Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1... [more]
FACR1_MOUSE1.660e-1831.62Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1... [more]
FACR1_HUMAN1.660e-1831.62Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1... [more]
FACR1_XENLA2.831e-1831.62Fatty acyl-CoA reductase 1 OS=Xenopus laevis GN=fa... [more]
FACR2_BOVIN1.076e-1733.82Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 P... [more]
FACR2_MOUSE2.397e-1730.88Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2... [more]
FACR1_CHICK3.130e-1731.62Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR... [more]
FACR1_DROME1.113e-1432.03Putative fatty acyl-CoA reductase CG5065 OS=Drosop... [more]
FACR3_DROME7.979e-1334.45Putative fatty acyl-CoA reductase CG8306 OS=Drosop... [more]

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Properties
Property NameValue
Genbank descriptionC02010E03SK IF1 Citrus clementina cDNA clone C02010E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289214 ID=CX289214; Name=CX289214; organism=Citrus clementina; type=EST; length=415bp
ACATATGTGTTTACAAAGGCAATGGGGGAAATGCTATTAGACCACTATAA
AGACAATCTTCCTATTATCATTATACGCCCAACCATGATAACAAGCACAT
ACAAAGAACCATTCCCGGGTTGGATTGAAGGTTTGAGAACAATTGATGTT
CCACTTATTACTTATGGTAAAGGAAAAATAGATTGCTTACCTGTCAATTC
TCAGACAATACTTGATTTGATACCAGCGGACGTGGTAGTGAACTCAATGA
TCATGGCAATGGTGGCAAATGCAAATAATCCATCATCTCAAATGATTTAT
CACGTTGGCTCATCCCTAAGAAACCCAATACATTTCTTCCAAATCCACGA
GTTTGCCTTTCATTATTTTACTAAAAATCCATATATTGATAAATATGGAA
ATCCAGTTATAGTTG
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