CX289219

Overview
NameCX289219
Unique NameCX289219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14880 contig Ccv1_Contig14880:141..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.196e-32
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +T GQVI C+AAVAWE  KPLVIE+V+VAPPQA EVRIKILFT+LCHTD Y W  K    LFP I GHEA GIVESVGEGVT+++ GDHV+
Sbjct:    3 NTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQNPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVL 93          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.196e-32
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +T GQVI CKAAVAWE  KPLV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEGVTE+ PGDHV+
Sbjct:    3 TTTGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTELAPGDHVL 93          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.563e-32
Identity = 64/89 (71.91%), Postives = 76/89 (85.39%), Query Frame = 3
Query:  117 EGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +GQVI CKAAVAWE  KPL +E+++VAPP+A EVR+K+L TA+CHTDAYT SG DPEG FP +LGHE AGIVESVGEGVT+ +PGD VI
Sbjct:    4 DGQVIHCKAAVAWEAKKPLSLEEIEVAPPKAHEVRMKVLATAVCHTDAYTLSGVDPEGSFPVVLGHEGAGIVESVGEGVTKFKPGDSVI 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH3_SOLTU (Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.563e-32
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +T GQVI CKAAVAWE  KPLV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEGVTE+ PGDHV+
Sbjct:    3 TTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTELAPGDHVL 93          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.563e-32
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M+T G+VI CKAAVAWE  KPL IE+V+VAPPQA EVR+KILFT+LCHTD Y W  K    +FP I GHEA GI+ESVGEGVT+V PGDHV+
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIIESVGEGVTDVAPGDHVL 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH2_MAIZE (Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.041e-32
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M+T G+VI C+AAV WE  KPL IE+V+VAPPQA EVRIKIL+TALCHTD Y W  K    +FP ILGHEA GIVESVGEGVT+V PGDHV+
Sbjct:    1 MATAGKVIKCRAAVTWEAGKPLSIEEVEVAPPQAMEVRIKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTDVAPGDHVL 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_SOLTU (Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.041e-32
Identity = 65/91 (71.43%), Postives = 74/91 (81.32%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +T GQVI CKAAVAWE  KPLV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEGVTE+ PGDHV+
Sbjct:    3 TTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTELGPGDHVL 93          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.041e-32
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M+T G+VI CKAAVAWE  KPL +E+V+VAPPQA EVR+KILFT+LCHTD Y W  K    +FP I GHEA GIVESVGEGVT+V PGDHV+
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLTMEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQIPMFPRIFGHEAGGIVESVGEGVTDVAPGDHVL 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.665e-32
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +T G+ I C+AAVAWE  KPL +E+V+VAPPQAGEVRIKI+ T +CHTDAYT SG DPEG+FP +LGHE AGIVESVGEGVT+ + GD VI
Sbjct:    1 ATVGKTIRCRAAVAWEAGKPLSMEEVEVAPPQAGEVRIKIVATGICHTDAYTLSGSDPEGVFPSVLGHEGAGIVESVGEGVTKFKSGDAVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.481e-32
Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = 3
Query:  123 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            QVI CKAAVAWE  KPL IE+++VAPPQA EVRIKI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT+++ GD VI
Sbjct:    4 QVIRCKAAVAWEAGKPLSIEEIEVAPPQAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVI 90          
The following BLAST results are available for this feature:
BLAST of CX289219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ADH_MALDO1.196e-3271.43Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADH2_SOLTU1.196e-3271.43Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD... [more]
ADHX_MYXGL1.563e-3271.91Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADH3_SOLTU1.563e-3271.43Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=AD... [more]
ADH1_MAIZE1.563e-3269.57Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]
ADH2_MAIZE2.041e-3270.65Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 S... [more]
ADH1_SOLTU2.041e-3271.43Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=AD... [more]
ADH1_HORVU2.041e-3269.57Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]
ADHL_GADMO2.665e-3270.33Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADHX_RAT3.481e-3275.86Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]

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Properties
Property NameValue
Genbank descriptionC02010E08SK IF1 Citrus clementina cDNA clone C02010E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289219 ID=CX289219; Name=CX289219; organism=Citrus clementina; type=EST; length=384bp
GCCACTCTCAGACCGTGTCACGTCCCTTTTTAATAATAATATCTATCTGC
ATCTACTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTC
AGCAGCCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGG
CCTGGGAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCG
CCTCAGGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCA
CACTGATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTT
GTATCCTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
GTGACCGAGGTTCAACCAGGTGATCATGTCATCC
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