CX289219

Overview
NameCX289219
Unique NameCX289219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14880 contig Ccv1_Contig14880:141..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.481e-32
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +T GQVI CKAAVAWE  KPLV+E+V VAPPQ  EVR+KIL+T+LCHTD Y W  K    +FP ILGHEAAGIVESVGEGVT++ PGDHV+
Sbjct:    3 TTVGQVIRCKAAVAWEAGKPLVMEEVDVAPPQKMEVRLKILYTSLCHTDVYFWEAKGQNPVFPRILGHEAAGIVESVGEGVTDLAPGDHVL 93          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.481e-32
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M+T G+VI CKAAVAWE  KPL IE+V+VAPPQA EVR+KIL+T+LCHTD Y W  K    +FP I GHEA GI+ESVGEGVT+V PGDHV+
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIIESVGEGVTDVAPGDHVL 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.546e-32
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            ST G+ ITCKAAVAWE  KPL IEDV VAPP+  EVRIK+  T +CHTDAYT SG DPEG FP ILGHE AGIVES+GEGVT V+ GDHVI
Sbjct:    4 STVGKPITCKAAVAWEAAKPLSIEDVTVAPPKRHEVRIKLYDTGVCHTDAYTLSGVDPEGAFPVILGHEGAGIVESIGEGVTNVKVGDHVI 94          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.937e-32
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            STEG+VI C+AAVAWE  KPLVIE+V+VAPPQA  VR+KIL+T+LCHTD Y W  K    LFP I GHEA GIVESVGEGVT+++ GDHV+
Sbjct:    3 STEGKVICCRAAVAWEAGKPLVIEEVEVAPPQANVVRVKILYTSLCHTDVYFWEAKGQNPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVL 93          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 5.937e-32
Identity = 66/87 (75.86%), Postives = 74/87 (85.06%), Query Frame = 3
Query:  123 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            QVI CKAAVAWE  KPL IE+++VAPP+A EVRIKIL TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT+++ GD VI
Sbjct:    4 QVIRCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKILATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVI 90          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.323e-31
Identity = 64/86 (74.42%), Postives = 73/86 (84.88%), Query Frame = 3
Query:  126 VITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            VI CKAAVAWE  KPL IE+++VAPP+A EVR+KI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT+ +PGD VI
Sbjct:    4 VIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRVKIIATAVCHTDAYTLSGADPEGSFPVILGHEGAGIVESVGEGVTKFKPGDTVI 89          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 134.035 bits (336), Expect = 2.256e-31
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 3
Query:  123 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT+++ GD VI
Sbjct:    4 EVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVI 90          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.947e-31
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 3
Query:  120 GQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            G+ I C AA+AWE  KPL IE+V+VAPP++GEVRIKIL + +CHTDAYT  G DPEG+FP ILGHE AGIVES+GEGVT V+PGD VI
Sbjct:    5 GKPIKCMAAIAWEAKKPLSIEEVEVAPPKSGEVRIKILHSGVCHTDAYTLEGIDPEGIFPVILGHEGAGIVESIGEGVTSVKPGDTVI 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.947e-31
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = 3
Query:  123 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            QVI CKAAVAWE  KPL IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG +P ILGHE AGIVESVGEGVT+++ GD VI
Sbjct:    4 QVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGNYPVILGHEGAGIVESVGEGVTKLKAGDTVI 90          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.026e-31
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = 3
Query:  123 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +VI CKAAVAWE  KP+ IE+V+VAPP+A EVRIKI+ TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT+++ GD VI
Sbjct:    4 EVIKCKAAVAWEAGKPVSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPVILGHEGAGIVESVGEGVTKLKAGDTVI 90          
The following BLAST results are available for this feature:
BLAST of CX289219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ADH2_SOLLC3.481e-3270.33Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN... [more]
ADH1_PENAM3.481e-3268.48Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]
FADH_CANMA4.546e-3273.63S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADH_FRAAN5.937e-3269.23Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]
ADHX_MOUSE5.937e-3275.86Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
ADHX_UROHA1.323e-3174.42Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
ADHX_HUMAN2.256e-3173.56Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADHX_OCTVU2.947e-3170.45Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]
ADHX_BOVIN2.947e-3174.71Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADHX_HORSE5.026e-3173.56Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]

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Properties
Property NameValue
Genbank descriptionC02010E08SK IF1 Citrus clementina cDNA clone C02010E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289219 ID=CX289219; Name=CX289219; organism=Citrus clementina; type=EST; length=384bp
GCCACTCTCAGACCGTGTCACGTCCCTTTTTAATAATAATATCTATCTGC
ATCTACTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTC
AGCAGCCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGG
CCTGGGAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCG
CCTCAGGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCA
CACTGATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTT
GTATCCTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
GTGACCGAGGTTCAACCAGGTGATCATGTCATCC
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