CX289219

Overview
NameCX289219
Unique NameCX289219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 6.565e-31
Identity = 64/87 (73.56%), Postives = 72/87 (82.76%), Query Frame = 3
Query:  123 QVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +VI CKAAVAWE  KPL IE+++VAPP+A EVRIKI  TA+CHTDAYT SG DPEG FP ILGHE AGIVESVGEGVT ++ GD VI
Sbjct:    4 KVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIFATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTNLKAGDTVI 90          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.462e-30
Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M+T G+VI CKAAVAWE  KPL +E+V+ APPQA EVR KIL+TALCHTD Y W       +FP ILGHEA GIVESVGEGVTE+ PGDHV+
Sbjct:    1 MATAGKVIKCKAAVAWEAGKPLSMEEVEDAPPQAMEVRDKILYTALCHTDVYFWEANGQTPVFPRILGHEAGGIVESVGEGVTELVPGDHVL 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.495e-30
Identity = 60/92 (65.22%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MSTEGQ+I CKAAVAWE  K L IE+++V PP+A EVR+K+ FT +CHTDAYT SG D EG FP + GHE AG+VESVGEGV  V+ GD V+
Sbjct:    1 MSTEGQIIKCKAAVAWEAGKDLSIEEIEVLPPRAHEVRVKVEFTGVCHTDAYTLSGADAEGSFPVVFGHEGAGVVESVGEGVESVKVGDSVV 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.258e-30
Identity = 64/90 (71.11%), Postives = 72/90 (80.00%), Query Frame = 3
Query:  114 TEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            T G++I CKAAVAW+P  PL IE+VQV PP+  EVRIKI+ + +CHTDAYT SGKDPEGLFP ILGHE AGIVESVG  VT VQ GD VI
Sbjct:    6 TAGKIINCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVI 95          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.112e-29
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +T G+ I C AAVA++  KPL +E++ V  P+A EVRIKI +TA+CHTDAYT SG DPEGLFPC+LGHE AGIVESVG+ V  V+PGDHVI
Sbjct:    4 ATVGKPIKCIAAVAYDAKKPLSVEEITVDAPKAHEVRIKIEYTAVCHTDAYTLSGSDPEGLFPCVLGHEGAGIVESVGDDVITVKPGDHVI 94          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHL4_ARATH (Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.369e-28
Identity = 60/93 (64.52%), Postives = 74/93 (79.57%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGK-DPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M T+G+VITCKAAVAW   +PLV+EDV+V PPQ  EVRI+ILFT++CHTD   W G+ + +  +P ILGHEAAGIVESVGEGV E+  GDHV+
Sbjct:    1 METQGKVITCKAAVAWGAGEPLVMEDVKVDPPQRLEVRIRILFTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEEMMAGDHVL 93          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 120.553 bits (301), Expect = 2.581e-27
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M T+G+VI CKAA+AWE  KPL IE+V+VAPP+A EVRI+I+ T+LCHTDA     K     FP I+GHEAAGIVES+G GVT V+PGD VI
Sbjct:    1 MGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVI 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.281e-26
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAY-TWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +T G+VI CKAAVAWE NKPLVIE+++V  P A E+RIKI+ T +CHTD Y  + GK  +G FP +LGHE AGIVESVG GVTE QPG+ VI
Sbjct:    1 ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG-FPVVLGHEGAGIVESVGPGVTEFQPGEKVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.854e-26
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  138 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +AAVA+ P KPL I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVI
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVI 85          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.854e-26
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = 3
Query:  138 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +AAVA+ P KPL I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEGVT V+PGDHVI
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVI 85          
The following BLAST results are available for this feature:
BLAST of CX289219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ADHX_RABIT6.565e-3173.56Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]
ADH2_HORVU1.462e-3068.48Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
FADH_PICPA2.495e-3065.22S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
FADH2_SCHPO3.258e-3071.11Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
FADH_YEAST2.112e-2965.93S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADHL4_ARATH1.369e-2864.52Alcohol dehydrogenase-like 4 OS=Arabidopsis thalia... [more]
ADH4_HUMAN2.581e-2764.13Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1_GADCA1.281e-2664.13Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
FRMA_SHISS2.854e-2664.63S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOUT2.854e-2664.63S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC02010E08SK IF1 Citrus clementina cDNA clone C02010E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289219 ID=CX289219; Name=CX289219; organism=Citrus clementina; type=EST; length=384bp
GCCACTCTCAGACCGTGTCACGTCCCTTTTTAATAATAATATCTATCTGC
ATCTACTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTC
AGCAGCCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGG
CCTGGGAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCG
CCTCAGGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCA
CACTGATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTT
GTATCCTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
GTGACCGAGGTTCAACCAGGTGATCATGTCATCC
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