CX289219

Overview
NameCX289219
Unique NameCX289219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.854e-26
Identity = 60/92 (65.22%), Postives = 70/92 (76.09%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MST G+VI CKAAV WEP KP  IE+V+VAPP+A EVRIKIL T +C +D +  +G      FP ILGHEAAG+VESVGEGVT V+PGD VI
Sbjct:    1 MSTAGKVIKCKAAVLWEPKKPFSIEEVEVAPPKAHEVRIKILATGICRSDDHVITGALVRP-FPIILGHEAAGVVESVGEGVTSVKPGDKVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.728e-26
Identity = 56/82 (68.29%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  138 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +AAVA+E  KPL I ++ VAPPQ GEV +KI  T +CHTDA+T SG DPEGLFP +LGHE AGIV  VGEGVT VQ GDHVI
Sbjct:    4 RAAVAFEVGKPLQIVEIDVAPPQQGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVLGHEGAGIVVEVGEGVTSVQLGDHVI 85          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.868e-26
Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  138 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +AAVA+ P  PL I ++ VAPP+ GEV +KI  T +CHTDAYT SG DPEGLFP +LGHE AG+V  VGEGVT V+PGDHVI
Sbjct:    4 RAAVAFGPGLPLEIVEIDVAPPKKGEVLVKISHTGVCHTDAYTLSGDDPEGLFPVVLGHEGAGVVVEVGEGVTSVKPGDHVI 85          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.085e-25
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MST+G+VI CKAA+AWE  KPL IE+V+VAPP+A EVR++I+  ++C +D Y  +    EGL P ILGHE AGIVESVG GV   +PGD VI
Sbjct:    1 MSTKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQIIAASVCRSDTYVINPAFKEGLLPVILGHECAGIVESVGPGVNNFKPGDKVI 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.850e-25
Identity = 51/91 (56.04%), Postives = 71/91 (78.02%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            +TEG+VI CKAA+AWE  KPL +E+++V+PP+  EVR+KI+ T +C TD +  +    EG+FP ILGHE AGIVES+G+GV++ +PGD VI
Sbjct:    1 TTEGKVIKCKAAIAWEAGKPLSVEEIEVSPPKDHEVRVKIVATGVCRTDEHAINPSFKEGVFPVILGHEGAGIVESIGQGVSKFKPGDKVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.416e-25
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MST GQVI CKAA+ W+P  P  IE+V+VAPP+A EVRIK++ T LC T+      K  + L+P ILGHE AGIVES+GEGV+ V+PGD VI
Sbjct:    1 MSTTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEGVSTVKPGDKVI 92          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.416e-25
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            ST G+VI CKAAV WEP KP  IE+V+VAPP+A EVR+KI+ T +C +D +  SG      FP ILGHEAAG+VESVGEGVT V+PGD VI
Sbjct:    1 STAGKVIKCKAAVLWEPKKPFSIEEVEVAPPKAHEVRVKIIATGICRSDDHVISGVLVMP-FPIILGHEAAGVVESVGEGVTSVKPGDKVI 90          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.156e-25
Identity = 59/91 (64.84%), Postives = 70/91 (76.92%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            ST G+VI CKAA+AWE NKPL IE ++VAPP+A EVRIKIL T +C +D +  SG     L P +LGHEAAG+VESVGEGVT V+PGD VI
Sbjct:    1 STAGKVIKCKAAIAWELNKPLSIEQIEVAPPKAHEVRIKILATGVCRSDEHVISGAFRMPL-PMVLGHEAAGVVESVGEGVTCVKPGDKVI 90          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MST G+VI CKAAV WEP+KP  IED++VAPP+A EVRIK++ T +C +D +  SG     L P +LGHE AGIVES+GEGVT V+PGD VI
Sbjct:    1 MSTAGKVIKCKAAVLWEPHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHAVSGSLFTPL-PAVLGHEGAGIVESIGEGVTCVKPGDKVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.121e-25
Identity = 60/92 (65.22%), Postives = 68/92 (73.91%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MST G+VI CKAAV WE  KP  IEDV+VAPP+A EVRIK++   +C TD +  SG     L P ILGHEAAGIVESVGEGVT V+PGD VI
Sbjct:    1 MSTAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNLVSPL-PAILGHEAAGIVESVGEGVTTVKPGDKVI 91          
The following BLAST results are available for this feature:
BLAST of CX289219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ADH1_APTAU2.854e-2665.22Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
FRMA_SYNY33.728e-2668.29S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
FRMA_PASPI4.868e-2665.85S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADHQ_RABIT1.085e-2559.78Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADH4_STRCA1.850e-2556.04Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
ADH6_PONAB2.416e-2559.78Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH1_STRCA2.416e-2563.74Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH1_NAJNA3.156e-2564.84Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]
ADH1_RAT4.121e-2561.96Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH1B_PAPHA4.121e-2565.22Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]

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Properties
Property NameValue
Genbank descriptionC02010E08SK IF1 Citrus clementina cDNA clone C02010E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289219 ID=CX289219; Name=CX289219; organism=Citrus clementina; type=EST; length=384bp
GCCACTCTCAGACCGTGTCACGTCCCTTTTTAATAATAATATCTATCTGC
ATCTACTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTC
AGCAGCCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGG
CCTGGGAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCG
CCTCAGGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCA
CACTGATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTT
GTATCCTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
GTGACCGAGGTTCAACCAGGTGATCATGTCATCC
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