CX289219

Overview
NameCX289219
Unique NameCX289219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14880 contig Ccv1_Contig14880:141..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.015e-23
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MST G+VI CKAAV WE NKP  +E+V+VAPP+A EVRIKI+ T +C +D +  +G      FP ILGHEAAG++ESVGE VT ++PGD VI
Sbjct:    1 MSTVGKVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMP-FPIILGHEAAGVIESVGEKVTSLKPGDAVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.326e-23
Identity = 50/85 (58.82%), Postives = 64/85 (75.29%), Query Frame = 3
Query:  129 ITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            I  +AAVA+ PN+PL I ++ V  P+ GEV I+   T +CHTDA+T SG DPEG+FP +LGHE AG+V +VGEGV  V+PGDHVI
Sbjct:   10 IKSRAAVAFAPNQPLQIVEIDVEMPRKGEVLIRNTHTGVCHTDAFTLSGSDPEGVFPVVLGHEGAGVVVAVGEGVLSVKPGDHVI 94          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.326e-23
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M T G+VI CKAAV W  N+P  IE+++VAPP+A EVR+KIL T +C TD +   G      FP I+GHEA G+VESVGEGVT V+PGD VI
Sbjct:    1 MGTAGKVIKCKAAVLWGVNQPFSIEEIEVAPPKAKEVRVKILATGICRTDDHIIKG-SMVSKFPVIVGHEAVGVVESVGEGVTTVRPGDKVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.326e-23
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     L P ILGHEAAGIVE VGEGVT V+PGD VI
Sbjct:    1 MSTAGKVIKCKAAVLWEVKKPFSIEEVEVAPPKAHEVRIKMVAVGICRSDDHVVSGTLVTPL-PAILGHEAAGIVEGVGEGVTTVKPGDKVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.732e-23
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M T G+VI CKAAV WE  +P  IE+++VAPP+  EVRIKIL T +C TD +   G      FP I+GHEA GIVES+GEGVT V+PGD VI
Sbjct:    1 MGTAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKG-TMVSKFPVIVGHEATGIVESIGEGVTTVKPGDKVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.261e-23
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            MST G+VI CKAAV WE  KP  IE+V+VAPP+A EVRIK++   +C +D +  SG     L P I GHEAAGIVES+GEGVT V+PGD VI
Sbjct:    1 MSTAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPL-PVIAGHEAAGIVESIGEGVTTVRPGDKVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.954e-23
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 3
Query:  111 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            ST G+VI CKAA+ WE  KP  IE+++VAPP+A EVRIKIL T +C +D +  +G     L P ILGHEAAG+VES GEGVT ++PGD VI
Sbjct:    1 STAGKVIKCKAAITWEIKKPFSIEEIEVAPPKAHEVRIKILATGICRSDDHVTAGLLTMPL-PMILGHEAAGVVESTGEGVTSLKPGDKVI 90          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.858e-23
Identity = 55/92 (59.78%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M T G+ ITCKAAVAWEP+KPL +E + VAPP+A EVRIKIL + +C +D+       P   FP ILGHEA G+VES+G GVT V+PGD VI
Sbjct:    1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGVTCVKPGDKVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.858e-23
Identity = 55/92 (59.78%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M T G+VI CKAAV W  N+P  IED++VAPP+A EVR+KIL T +C TD +   G      FP I+GHEA GIVESVGE VT V+PGD VI
Sbjct:    1 MDTAGKVIKCKAAVLWGTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIKG-TMVSKFPVIVGHEAVGIVESVGEEVTTVRPGDKVI 91          
BLAST of CX289219 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.038e-23
Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  108 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVI 383
            M T+G+VI CKAA+AW+   PL IE+++V+PP+A EVRI+++ T +C TD      K  + LFP +LGHE AGIVESVG GVT  +PGD VI
Sbjct:    1 MGTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVTNFKPGDKVI 91          
The following BLAST results are available for this feature:
BLAST of CX289219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ADH1_CHICK1.015e-2359.78Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
FRMA_HAEIN1.326e-2358.82S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADH7_MOUSE1.326e-2358.70Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADH1G_PAPHA1.326e-2361.96Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADH7_HUMAN1.732e-2358.70Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH1S_HORSE2.261e-2360.87Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
ADH1_ALLMI2.954e-2359.34Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADH8_RANPE3.858e-2359.78NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]
ADH7_RAT3.858e-2359.78Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH4_MOUSE5.038e-2355.43Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC02010E08SK IF1 Citrus clementina cDNA clone C02010E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289219 ID=CX289219; Name=CX289219; organism=Citrus clementina; type=EST; length=384bp
GCCACTCTCAGACCGTGTCACGTCCCTTTTTAATAATAATATCTATCTGC
ATCTACTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTC
AGCAGCCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGG
CCTGGGAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCG
CCTCAGGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCA
CACTGATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTT
GTATCCTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
GTGACCGAGGTTCAACCAGGTGATCATGTCATCC
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