CX289225

Overview
NameCX289225
Unique NameCX289225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.639e-40
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQ 326
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGI+NV A DK TGK  KITITNDKGRLS+
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAADKSTGKENKITITNDKGRLSK 512
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.639e-40
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++T+D  LLG+FDL+GIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  407 TAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVLDAEKYKAEDE 532
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.639e-40
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++T+D  LLG+F+LSGIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  405 TAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDE 530
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HS71B_BOVIN (Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.639e-40
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++T+D  LLG+F+LSGIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  405 TAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDE 530
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.639e-40
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++T+D  LLG+F+LSGIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  405 TAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDE 530
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.639e-40
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++T+D  LLG+F+LSGIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  405 TAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDE 530
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HS71A_BOVIN (Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA1A PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 2.639e-40
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++T+D  LLG+F+LSGIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  405 TAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDE 530
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_ICTPU (Heat shock cognate 71 kDa protein OS=Ictalurus punctatus GN=hsc70 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.446e-40
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQ 326
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGI+NV A DK TGK  KITITNDKGRLS+
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAVDKSTGKENKITITNDKGRLSK 512
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_DANRE (Heat shock cognate 71 kDa protein OS=Danio rerio GN=hspa8 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.446e-40
Identity = 79/108 (73.15%), Postives = 90/108 (83.33%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQ 326
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGI+NV A DK TGK  KITITNDKGRLS+
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIMNVSAVDKSTGKENKITITNDKGRLSK 512
[Close]
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 3.446e-40
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 3 
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++T+D  LLG+FDL+GIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  407 TAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDE 532
The following BLAST results are available for this feature:
BLAST of CX289225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_ONCMY2.639e-4073.15Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HS71L_PIG2.639e-4063.49Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HS71B_PIG2.639e-4063.49Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]
HS71B_BOVIN2.639e-4063.49Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA... [more]
HS71B_BOSMU2.639e-4063.49Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HS71A_PIG2.639e-4063.49Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HS71A_BOVIN2.639e-4063.49Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA... [more]
HSP7C_ICTPU3.446e-4073.15Heat shock cognate 71 kDa protein OS=Ictalurus pun... [more]
HSP7C_DANRE3.446e-4073.15Heat shock cognate 71 kDa protein OS=Danio rerio G... [more]
HS71L_RAT3.446e-4063.49Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]

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Properties
Property NameValue
Genbank descriptionC02010F02SK IF1 Citrus clementina cDNA clone C02010F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289225 ID=CX289225; Name=CX289225; organism=Citrus clementina; type=EST; length=389bp
AGACAGTTGGTGGGGTGATGACCAAGTTGATCCCAAGAAACACGGTCATT
CCAACCAAGAAATCTCAAGTTTTCACCACTTATCAAGACCAGCAGACTAC
AGTTTCCATTCAGGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGATTGCA
GATTGCTTGGGAAATTCGATCTTTCTGGAATTCCTCCAGCTCCTAGGGGA
ACCCCTCAAATTGAAGTCACATTTGAAGTTGATGCAAATGGTATCTTAAA
TGTAAAGGCAGAAGACAAGGGCACAGGCAAATCAGAGAAAATTACCATCA
CAAATGACAAGGGTCGCCTGAGCCAGGAGGAGATTGAGCGTATGGTTCGT
GAGGCTGAAGAATTTGCCGAGGAGGACAAGAAAGTAAAG
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