CX289225

Overview
NameCX289225
Unique NameCX289225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 163.31 bits (412), Expect = 3.446e-40
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++T+D  LLG+FDL+GIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  407 TAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDE 532          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.446e-40
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++T+D  LLG+FDL+GIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  407 TAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTAMDKSTGKANKITITNDKGRLSKEEIERMVLDAEKYKAEDE 532          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP70_PLEWA (Heat shock 70 kDa protein OS=Pleurodeles waltlii GN=HSP70 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.501e-40
Identity = 79/108 (73.15%), Postives = 91/108 (84.26%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQ 326
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++TKD  LLGKF+LSGIPPAPRG PQIEVTF++DANGILNV A DK +GK  KITITNDKGRLS+
Sbjct:  407 TAGGVMTVLIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNSLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSSGKQNKITITNDKGRLSK 514          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP70_ECHGR (Heat shock cognate 70 kDa protein OS=Echinococcus granulosus GN=HSP70 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.501e-40
Identity = 81/127 (63.78%), Postives = 93/127 (73.23%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++ +D  LLGKF+LSGIPP PRG PQIEVTF++DANGILNV A DK TGK  KITIT DKGRLS+            F +ED+K
Sbjct:  407 TAGGVMTALIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMKRDNNLLGKFELSGIPPGPRGVPQIEVTFDIDANGILNVSAVDKSTGKQNKITITRDKGRLSKEEIERMVNDAEKFKQEDEK 533          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HS7C2_DICDI (Heat shock cognate 70 kDa protein 2 OS=Dictyostelium discoideum GN=hspE-1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 4.501e-40
Identity = 77/107 (71.96%), Postives = 89/107 (83.18%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLS 323
            T GGVMT LIPRNT IP KK+Q F+TY D QT V +QV+EGER++T+D  LLGKF+L+ IPPAPRG PQIEVTF++DANGILNV AEDK TG   KITITNDKGRL+
Sbjct:  404 TAGGVMTTLIPRNTTIPCKKNQTFSTYSDNQTGVLVQVYEGERAMTRDNNLLGKFELTNIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGNKHKITITNDKGRLT 510          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.878e-40
Identity = 83/129 (64.34%), Postives = 94/129 (72.87%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T GGVMT LI RNT IPTKK QVF+TY D Q  V IQV+EGER+ TKD  LLGKF+LSGIPPAPRG PQI V F++DANGILNV AEDK TG+  KITITNDKGRLS+            +  ED++ K
Sbjct:  411 TAGGVMTVLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHK 539          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.878e-40
Identity = 82/129 (63.57%), Postives = 94/129 (72.87%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T GGVMT LIPRNT IPTKK QVF+TY D Q  V IQV+EGER+ T+D  LLGKF+LSGIPPAPRG PQI V F++DANG LNV AEDK TG+  KITITNDKGRLS+            +  ED++ K
Sbjct:  411 TAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGTLNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHK 539          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 5.878e-40
Identity = 80/126 (63.49%), Postives = 95/126 (75.40%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q FTTY D Q  V IQV+EGER++T+D  LLG+F+LSGIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  405 TAGGVMTALIKRNSTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDE 530          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP70_XENLA (Heat shock 70 kDa protein OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 5.878e-40
Identity = 80/108 (74.07%), Postives = 90/108 (83.33%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQ 326
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQVFEGER++TKD  LLGKF+LSGIPPAPRG PQIEVTF++DANGILNV A +K +GK  KITITNDKGRLS+
Sbjct:  406 TAGGVMTVLIKRNTTIPTKQTQSFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVEKSSGKQNKITITNDKGRLSK 513          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP70_PLAFA (Heat shock 70 kDa protein OS=Plasmodium falciparum PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 5.878e-40
Identity = 83/127 (65.35%), Postives = 92/127 (72.44%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMTKLI RNT IP KKSQ+FTTY D Q  V IQV+EGER+LTKD  LLGKF L GIPPAPR  PQIEVTF++DANGILNV A +K TGK   ITITNDKGRLSQ            +  ED++
Sbjct:  418 TAGGVMTKLIERNTTIPAKKSQIFTTYADNQPGVLIQVYEGERALTKDNNLLGKFHLDGIPPAPRKVPQIEVTFDIDANGILNVTAVEKSTGKQNHITITNDKGRLSQDEIDRMVNDAEKYKAEDEE 544          
The following BLAST results are available for this feature:
BLAST of CX289225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71L_MOUSE3.446e-4063.49Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HS71L_BOVIN3.446e-4063.49Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
HSP70_PLEWA4.501e-4073.15Heat shock 70 kDa protein OS=Pleurodeles waltlii G... [more]
HSP70_ECHGR4.501e-4063.78Heat shock cognate 70 kDa protein OS=Echinococcus ... [more]
HS7C2_DICDI4.501e-4071.96Heat shock cognate 70 kDa protein 2 OS=Dictyosteli... [more]
HSP73_ARATH5.878e-4064.34Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP72_SOLLC5.878e-4063.57Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP71_RAT5.878e-4063.49Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP70_XENLA5.878e-4074.07Heat shock 70 kDa protein OS=Xenopus laevis PE=2 S... [more]
HSP70_PLAFA5.878e-4065.35Heat shock 70 kDa protein OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionC02010F02SK IF1 Citrus clementina cDNA clone C02010F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289225 ID=CX289225; Name=CX289225; organism=Citrus clementina; type=EST; length=389bp
AGACAGTTGGTGGGGTGATGACCAAGTTGATCCCAAGAAACACGGTCATT
CCAACCAAGAAATCTCAAGTTTTCACCACTTATCAAGACCAGCAGACTAC
AGTTTCCATTCAGGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGATTGCA
GATTGCTTGGGAAATTCGATCTTTCTGGAATTCCTCCAGCTCCTAGGGGA
ACCCCTCAAATTGAAGTCACATTTGAAGTTGATGCAAATGGTATCTTAAA
TGTAAAGGCAGAAGACAAGGGCACAGGCAAATCAGAGAAAATTACCATCA
CAAATGACAAGGGTCGCCTGAGCCAGGAGGAGATTGAGCGTATGGTTCGT
GAGGCTGAAGAATTTGCCGAGGAGGACAAGAAAGTAAAG
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