CX289225

Overview
NameCX289225
Unique NameCX289225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: GRP78_PIG (78 kDa glucose-regulated protein (Fragment) OS=Sus scrofa GN=HSPA5 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 7.926e-45
Identity = 89/129 (68.99%), Postives = 100/129 (77.52%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTV+PTKKSQ+F+T  D Q TV+I+V+EGER LTKD  LLG FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+             FAEEDKK+K
Sbjct:   72 TVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLK 200          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 7.926e-45
Identity = 89/129 (68.99%), Postives = 100/129 (77.52%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTV+PTKKSQ+F+T  D Q TV+I+V+EGER LTKD  LLG FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+             FAEEDKK+K
Sbjct:  429 TVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLK 557          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.926e-45
Identity = 89/129 (68.99%), Postives = 100/129 (77.52%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTV+PTKKSQ+F+T  D Q TV+I+V+EGER LTKD  LLG FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+             FAEEDKK+K
Sbjct:  428 TVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLK 556          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 7.926e-45
Identity = 89/129 (68.99%), Postives = 100/129 (77.52%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTV+PTKKSQ+F+T  D Q TV+I+V+EGER LTKD  LLG FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+             FAEEDKK+K
Sbjct:  428 TVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLK 556          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.926e-45
Identity = 89/129 (68.99%), Postives = 100/129 (77.52%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTV+PTKKSQ+F+T  D Q TV+I+V+EGER LTKD  LLG FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+             FAEEDKK+K
Sbjct:  426 TVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLK 554          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.926e-45
Identity = 89/129 (68.99%), Postives = 100/129 (77.52%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTV+PTKKSQ+F+T  D Q TV+I+V+EGER LTKD  LLG FDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   KITITND+ RL+             FAEEDKK+K
Sbjct:  429 TVGGVMTKLIPRNTVVPTKKSQIFSTASDNQPTVTIKVYEGERPLTKDNHLLGTFDLTGIPPAPRGVPQIEVTFEIDVNGILRVTAEDKGTGNKNKITITNDQNRLTPEEIERMVNDAEKFAEEDKKLK 557          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEEL (Heat shock 70 kDa protein C OS=Caenorhabditis elegans GN=hsp-3 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.035e-44
Identity = 91/129 (70.54%), Postives = 100/129 (77.52%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLI RNTVIPTKKSQVF+T  D Q TV+IQVFEGER +TKD   LGKFDL+G+PPAPRG PQIEVTFE+D NGIL+V AEDKGTG   KITITND+ RLS             FAE+DKKVK
Sbjct:  433 TVGGVMTKLIGRNTVIPTKKSQVFSTAADNQPTVTIQVFEGERPMTKDNHQLGKFDLTGLPPAPRGVPQIEVTFEIDVNGILHVTAEDKGTGNKNKITITNDQNRLSPEDIERMINDAEKFAEDDKKVK 561          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP71_PICAN (Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 1.035e-44
Identity = 88/127 (69.29%), Postives = 101/127 (79.53%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMTKLIPRNT IPTKKS++F+TY D Q  V IQV+EGER+ TKD  LLGKF+LSGIPPAPRG PQIEVTF++DANGILNV A +KGTGKS+KITITNDKGRLS+            + EED+K
Sbjct:  405 TAGGVMTKLIPRNTTIPTKKSEIFSTYSDNQPGVLIQVYEGERAKTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSAVEKGTGKSQKITITNDKGRLSKEEIDRMVAEAEKYKEEDEK 531          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.352e-44
Identity = 89/129 (68.99%), Postives = 100/129 (77.52%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            TVGGVMTKLIPRNTVIPTKKSQ+F+T  D Q TV+IQV+EGERS+TKD  LLGKFDL+GIPPAPRG PQIEVTFE+D NGIL V AEDKGTG   +I I ND+ RLS             +A+EDKKVK
Sbjct:  437 TVGGVMTKLIPRNTVIPTKKSQIFSTAADNQPTVTIQVYEGERSMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEIDVNGILKVTAEDKGTGSKNQIVIQNDQNRLSPEDIERMINDAEKYADEDKKVK 565          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP72_YEAST (Heat shock protein SSA2 OS=Saccharomyces cerevisiae GN=SSA2 PE=1 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 1.766e-44
Identity = 90/127 (70.87%), Postives = 100/127 (78.74%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMTKLIPRN+ IPTKKS+VF+TY D Q  V IQVFEGER+ TKD  LLGKF+LSGIPPAPRG PQIEVTF+VD+NGILNV A +KGTGKS KITITNDKGRLS+            F EED+K
Sbjct:  402 TAGGVMTKLIPRNSTIPTKKSEVFSTYADNQPGVLIQVFEGERAKTKDNNLLGKFELSGIPPAPRGVPQIEVTFDVDSNGILNVSAVEKGTGKSNKITITNDKGRLSKEDIEKMVAEAEKFKEEDEK 528          
The following BLAST results are available for this feature:
BLAST of CX289225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_PIG7.926e-4568.9978 kDa glucose-regulated protein (Fragment) OS=Sus... [more]
GRP78_MOUSE7.926e-4568.9978 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_MESAU7.926e-4568.9978 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN7.926e-4568.9978 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_CHICK7.926e-4568.9978 kDa glucose-regulated protein OS=Gallus gallus ... [more]
GRP78_BOVIN7.926e-4568.9978 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
HSP7C_CAEEL1.035e-4470.54Heat shock 70 kDa protein C OS=Caenorhabditis eleg... [more]
HSP71_PICAN1.035e-4469.29Heat shock protein 70 1 OS=Pichia angusta GN=HSA1 ... [more]
GRP78_APLCA1.352e-4468.9978 kDa glucose-regulated protein OS=Aplysia califo... [more]
HSP72_YEAST1.766e-4470.87Heat shock protein SSA2 OS=Saccharomyces cerevisia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02010F02SK IF1 Citrus clementina cDNA clone C02010F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289225 ID=CX289225; Name=CX289225; organism=Citrus clementina; type=EST; length=389bp
AGACAGTTGGTGGGGTGATGACCAAGTTGATCCCAAGAAACACGGTCATT
CCAACCAAGAAATCTCAAGTTTTCACCACTTATCAAGACCAGCAGACTAC
AGTTTCCATTCAGGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGATTGCA
GATTGCTTGGGAAATTCGATCTTTCTGGAATTCCTCCAGCTCCTAGGGGA
ACCCCTCAAATTGAAGTCACATTTGAAGTTGATGCAAATGGTATCTTAAA
TGTAAAGGCAGAAGACAAGGGCACAGGCAAATCAGAGAAAATTACCATCA
CAAATGACAAGGGTCGCCTGAGCCAGGAGGAGATTGAGCGTATGGTTCGT
GAGGCTGAAGAATTTGCCGAGGAGGACAAGAAAGTAAAG
back to top