CX289225

Overview
NameCX289225
Unique NameCX289225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: DNAK_UNCMA (Chaperone protein dnaK OS=Uncultured methanogenic archaeon RC-I GN=dnaK PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 72/129 (55.81%), Postives = 86/129 (66.67%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T+G V T+LI RNT IPT+KSQVF+T  D QT+V I V +GER +  D   LG+F L GIPPAPRG PQIEVTF++DANGILNVKA+D GTGK + ITIT    +L +            FA ED   K
Sbjct:  374 TLGNVATRLIERNTTIPTRKSQVFSTAADNQTSVEIHVIQGERPMAYDNTTLGRFHLIGIPPAPRGIPQIEVTFDIDANGILNVKAKDLGTGKEQAITITAST-KLDKSDIERMVKDAEKFAAEDAAKK 501          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: DNAK_TREPS (Chaperone protein dnaK OS=Treponema pallidum subsp. pallidum (strain SS14) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 71/127 (55.91%), Postives = 85/127 (66.93%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T+GGV T LI RNT IPT+KSQVF+T  D QT VSI V +GER +    R LG FDL GIPPAPRG PQIEVTF++DANGI++V A+D GTGK + I I +  G LS+             AE DK+
Sbjct:  397 TMGGVFTPLISRNTTIPTRKSQVFSTAADGQTAVSIHVLQGERGMANQNRTLGNFDLVGIPPAPRGVPQIEVTFDIDANGIVHVSAKDLGTGKEQHIRIESSSG-LSESEIDRMVKEAEANAESDKR 522          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: DNAK_TREPA (Chaperone protein dnaK OS=Treponema pallidum GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 71/127 (55.91%), Postives = 85/127 (66.93%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T+GGV T LI RNT IPT+KSQVF+T  D QT VSI V +GER +    R LG FDL GIPPAPRG PQIEVTF++DANGI++V A+D GTGK + I I +  G LS+             AE DK+
Sbjct:  397 TMGGVFTPLISRNTTIPTRKSQVFSTAADGQTAVSIHVLQGERGMANQNRTLGNFDLVGIPPAPRGVPQIEVTFDIDANGIVHVSAKDLGTGKEQHIRIESSSG-LSESEIDRMVKEAEANAESDKR 522          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: DNAK_RALME (Chaperone protein dnaK OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=dnaK PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 68/129 (52.71%), Postives = 92/129 (71.32%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T+GGVMTK+I +NT IPTK +QVF+T  D Q  V+I+V++GER +    ++LG+F+L GI PAPRGTPQIEV+F++DANGIL+V A+DK TGK  +ITI  + G LS+             AEEDK+ +
Sbjct:  404 TLGGVMTKMINKNTTIPTKHAQVFSTADDNQPAVTIKVYQGEREMATGNKMLGEFNLEGIAPAPRGTPQIEVSFDIDANGILHVGAKDKATGKENRITIKANSG-LSEDEIQRMVKDAEANAEEDKRAR 531          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: DNAK_PSYWF (Chaperone protein dnaK OS=Psychrobacter sp. (strain PRwf-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 65/126 (51.59%), Postives = 90/126 (71.43%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T+GGVMT +I +NT+IPTKKSQVF+T +D Q  V+I+VF+GER +    +LLG+F+L+ IPPAPRG PQIEVTF+++A+GI+N+ A+DKGTGK + I I  D G   +             AE++K
Sbjct:  402 TMGGVMTGIIEKNTMIPTKKSQVFSTAEDNQPAVTIKVFQGERKVAAQNKLLGEFNLTDIPPAPRGMPQIEVTFDINADGIMNISAKDKGTGKEQSIQIKADSGLSDEEIEQMVRDAEANAAEDEK 527          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: DNAK_LACSN (Chaperone protein dnaK OS=Lactobacillus sanfranciscensis GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 71/129 (55.04%), Postives = 85/129 (65.89%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T+GGVMTKLI +NT IPT KSQ F+T  D QT V I V +GER +  D + LG+F L+ IP APRG PQIEVTF++D NGI+NV A+DKGTGK +KITI +  G LS               E DKK K
Sbjct:  376 TMGGVMTKLIEKNTTIPTSKSQTFSTAADNQTAVDIHVLQGERPMAADNKSLGRFQLTDIPAAPRGIPQIEVTFDIDKNGIVNVSAKDKGTGKEQKITIKDSNG-LSDEEIEKMMNEAKANEEADKKKK 503          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: DNAK_CHLTE (Chaperone protein dnaK OS=Chlorobium tepidum GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 68/129 (52.71%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T+GGVMTKLI  NT IPT+K ++F+T  D QT+V + V +GER +  D + LG+F LS IPPAPRG PQIEVTF++DANGILNV A+DK TGK + I I    G+L++             A ED+K K
Sbjct:  396 TLGGVMTKLIEANTTIPTRKQEIFSTAADNQTSVEVHVLQGERPMASDNKTLGRFHLSDIPPAPRGVPQIEVTFDIDANGILNVSAKDKATGKEQSIKI-EASGKLTEAEIEKMKEDAKAHAAEDQKRK 523          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: DNAK_CAMFF (Chaperone protein dnaK OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 69/129 (53.49%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T+GGVM+KLI + T IPTKKSQ F+T +D Q+ V+I V +GER   KD + LG F+L GI PAPRG PQIEVTF++DANGIL V A+DK +GK++ ITI+   G LS+              E+DKK K
Sbjct:  397 TLGGVMSKLIEKGTTIPTKKSQTFSTAEDNQSAVTINVLQGEREFAKDNKSLGNFNLEGIMPAPRGVPQIEVTFDIDANGILTVSAKDKASGKAQNITISGSSG-LSEEEINKMVNDAEAHKEDDKKRK 524          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: DNAK_BURCM (Chaperone protein dnaK OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 63/104 (60.58%), Postives = 83/104 (79.81%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKG 314
            T+GGVMTK+I +NT IPTK +QV++T  D Q+ V+I+VF+GER +    +LLG+F+L GIPP+PRG PQIEVTF++DANGIL+V A+DK TGK  KITI  + G
Sbjct:  404 TLGGVMTKMISKNTTIPTKHAQVYSTADDNQSAVTIKVFQGEREMAAGNKLLGEFNLEGIPPSPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG 507          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: DNAK_BURA4 (Chaperone protein dnaK OS=Burkholderia ambifaria (strain MC40-6) GN=dnaK PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.313e-31
Identity = 63/104 (60.58%), Postives = 83/104 (79.81%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKG 314
            T+GGVMTK+I +NT IPTK +QV++T  D Q+ V+I+VF+GER +    +LLG+F+L GIPP+PRG PQIEVTF++DANGIL+V A+DK TGK  KITI  + G
Sbjct:  404 TLGGVMTKMISKNTTIPTKHAQVYSTADDNQSAVTIKVFQGEREMAAGNKLLGEFNLEGIPPSPRGVPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSG 507          
The following BLAST results are available for this feature:
BLAST of CX289225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_UNCMA1.313e-3155.81Chaperone protein dnaK OS=Uncultured methanogenic ... [more]
DNAK_TREPS1.313e-3155.91Chaperone protein dnaK OS=Treponema pallidum subsp... [more]
DNAK_TREPA1.313e-3155.91Chaperone protein dnaK OS=Treponema pallidum GN=dn... [more]
DNAK_RALME1.313e-3152.71Chaperone protein dnaK OS=Ralstonia metallidurans ... [more]
DNAK_PSYWF1.313e-3151.59Chaperone protein dnaK OS=Psychrobacter sp. (strai... [more]
DNAK_LACSN1.313e-3155.04Chaperone protein dnaK OS=Lactobacillus sanfrancis... [more]
DNAK_CHLTE1.313e-3152.71Chaperone protein dnaK OS=Chlorobium tepidum GN=dn... [more]
DNAK_CAMFF1.313e-3153.49Chaperone protein dnaK OS=Campylobacter fetus subs... [more]
DNAK_BURCM1.313e-3160.58Chaperone protein dnaK OS=Burkholderia ambifaria (... [more]
DNAK_BURA41.313e-3160.58Chaperone protein dnaK OS=Burkholderia ambifaria (... [more]

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Properties
Property NameValue
Genbank descriptionC02010F02SK IF1 Citrus clementina cDNA clone C02010F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289225 ID=CX289225; Name=CX289225; organism=Citrus clementina; type=EST; length=389bp
AGACAGTTGGTGGGGTGATGACCAAGTTGATCCCAAGAAACACGGTCATT
CCAACCAAGAAATCTCAAGTTTTCACCACTTATCAAGACCAGCAGACTAC
AGTTTCCATTCAGGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGATTGCA
GATTGCTTGGGAAATTCGATCTTTCTGGAATTCCTCCAGCTCCTAGGGGA
ACCCCTCAAATTGAAGTCACATTTGAAGTTGATGCAAATGGTATCTTAAA
TGTAAAGGCAGAAGACAAGGGCACAGGCAAATCAGAGAAAATTACCATCA
CAAATGACAAGGGTCGCCTGAGCCAGGAGGAGATTGAGCGTATGGTTCGT
GAGGCTGAAGAATTTGCCGAGGAGGACAAGAAAGTAAAG
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