CX289225

Overview
NameCX289225
Unique NameCX289225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: GRP78_DEBHA (78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.117e-41
Identity = 85/129 (65.89%), Postives = 97/129 (75.19%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T GGVMT LI RNT IPTKKSQ+F+T  D Q TV IQVFEGER+L KD   LGKF+L+ IPPAPRG PQIEVTF +DANGIL V+A DKGTGKSE ITITNDKGRLS+            +AE+D ++K
Sbjct:  447 TTGGVMTTLINRNTAIPTKKSQIFSTAADNQPTVLIQVFEGERALAKDNNKLGKFELTSIPPAPRGVPQIEVTFSLDANGILKVEAMDKGTGKSESITITNDKGRLSKEDIDRMVEEAEKYAEQDSELK 575          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 83/127 (65.35%), Postives = 95/127 (74.80%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A DK TGK  KITITNDKGRLS+            +  ED+K
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 83/127 (65.35%), Postives = 95/127 (74.80%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A DK TGK  KITITNDKGRLS+            +  ED+K
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 83/127 (65.35%), Postives = 95/127 (74.80%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A DK TGK  KITITNDKGRLS+            +  ED+K
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 83/127 (65.35%), Postives = 95/127 (74.80%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A DK TGK  KITITNDKGRLS+            +  ED+K
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 83/127 (65.35%), Postives = 95/127 (74.80%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A DK TGK  KITITNDKGRLS+            +  ED+K
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 83/127 (65.35%), Postives = 95/127 (74.80%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A DK TGK  KITITNDKGRLS+            +  ED+K
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 83/127 (65.35%), Postives = 95/127 (74.80%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A DK TGK  KITITNDKGRLS+            +  ED+K
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 83/127 (65.35%), Postives = 95/127 (74.80%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A DK TGK  KITITNDKGRLS+            +  ED+K
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 83/127 (65.35%), Postives = 95/127 (74.80%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQV+EGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A DK TGK  KITITNDKGRLS+            +  ED+K
Sbjct:  405 TAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531          
The following BLAST results are available for this feature:
BLAST of CX289225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_DEBHA3.117e-4165.8978 kDa glucose-regulated protein homolog OS=Debary... [more]
HSP7C_SAGOE4.071e-4165.35Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT4.071e-4165.35Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB4.071e-4165.35Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_MOUSE4.071e-4165.35Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]
HSP7C_HUMAN4.071e-4165.35Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
HSP7C_HORSE4.071e-4165.35Heat shock cognate 71 kDa protein OS=Equus caballu... [more]
HSP7C_CRIGR4.071e-4165.35Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]
HSP7C_CHICK4.071e-4165.35Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP7C_BOVIN4.071e-4165.35Heat shock cognate 71 kDa protein OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC02010F02SK IF1 Citrus clementina cDNA clone C02010F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289225 ID=CX289225; Name=CX289225; organism=Citrus clementina; type=EST; length=389bp
AGACAGTTGGTGGGGTGATGACCAAGTTGATCCCAAGAAACACGGTCATT
CCAACCAAGAAATCTCAAGTTTTCACCACTTATCAAGACCAGCAGACTAC
AGTTTCCATTCAGGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGATTGCA
GATTGCTTGGGAAATTCGATCTTTCTGGAATTCCTCCAGCTCCTAGGGGA
ACCCCTCAAATTGAAGTCACATTTGAAGTTGATGCAAATGGTATCTTAAA
TGTAAAGGCAGAAGACAAGGGCACAGGCAAATCAGAGAAAATTACCATCA
CAAATGACAAGGGTCGCCTGAGCCAGGAGGAGATTGAGCGTATGGTTCGT
GAGGCTGAAGAATTTGCCGAGGAGGACAAGAAAGTAAAG
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