CX289225

Overview
NameCX289225
Unique NameCX289225
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 84/129 (65.12%), Postives = 95/129 (73.64%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T GGVMT LIPRNT IPTKK QVF+TY D Q  V IQV+EGER+ TKD  LLGKF+LSGIPPAPRG PQI VTF++D N ILNV AEDK TG+  KITITNDKGRLS+            +  ED++VK
Sbjct:  407 TAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVTFDIDVNNILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEVK 535          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: GRP78_CANGA (78 kDa glucose-regulated protein homolog OS=Candida glabrata GN=KAR2 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.071e-41
Identity = 84/125 (67.20%), Postives = 95/125 (76.00%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEED 377
            T GGVMT LI RNT IPTKKSQ+F+T  D Q TV I+V+EGER+++KD  LLGKF+L+GIPPAPRG PQIEVTF +DANGIL V A DKGTGKSE ITITNDKGRL+Q            FA ED
Sbjct:  434 TTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVQIKVYEGERAMSKDNNLLGKFELTGIPPAPRGIPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQDEIDRMVEEAEKFASED 558          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 5.316e-41
Identity = 84/129 (65.12%), Postives = 95/129 (73.64%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T GGVMT LIPRNT IPTKK QVF+TY D Q  V IQV+EGER+ TKD  LLGKF+LSGIPPAPRG PQI V F++DANGILNV AEDK TG+  KITITNDKGRLS+            +  ED++ K
Sbjct:  411 TAGGVMTTLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHK 539          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP70_PENCI (Heat shock 70 kDa protein (Fragment) OS=Penicillium citrinum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.316e-41
Identity = 83/126 (65.87%), Postives = 95/126 (75.40%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RNT IPTKKS+ F+TY D Q  V IQVFEGER+ TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGI+NV A +KGTGKS KITITNDKGRLS+            +  ED+
Sbjct:  273 TAGGVMTPLIKRNTTIPTKKSETFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQIEVTFDLDANGIMNVSASEKGTGKSNKITITNDKGRLSKEEIERMLAEAEKYKAEDE 398          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.943e-41
Identity = 83/129 (64.34%), Postives = 95/129 (73.64%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T GGVMT LI RNT IPTK++Q FTTY D Q  V IQVFEGER++TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A +K T K  KITITNDKGRLS+            +  ED+K K
Sbjct:  405 TAGGVMTTLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDEKQK 533          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 6.943e-41
Identity = 85/129 (65.89%), Postives = 94/129 (72.87%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKKVK 389
            T GGVMT LI RNT IPTKK QVF+TY D Q  V IQVFEGER+ TKD  LLGKF+LSGIPPAPRG PQI V F++DANGILNV AEDK TGK  KITITNDKGRLS+            +  ED++ K
Sbjct:  411 TAGGVMTTLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGKKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHK 539          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP7A_CAEEL (Heat shock 70 kDa protein A OS=Caenorhabditis elegans GN=hsp-1 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 9.068e-41
Identity = 81/108 (75.00%), Postives = 89/108 (82.41%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQ 326
            T GGVMT LI RNT IPTK +Q FTTY D Q  V IQV+EGER++TKD  LLGKF+LSGIPPAPRG PQIEVTF++DANGILNV A DK TGK  KITITNDKGRLS+
Sbjct:  406 TAGGVMTALIKRNTTIPTKTAQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSK 513          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP72_ANOAL (Heat shock protein 70 A2 OS=Anopheles albimanus GN=HSP70A2 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.184e-40
Identity = 82/127 (64.57%), Postives = 98/127 (77.17%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMTKLI RN+ IP K++++F+TY D Q  VSIQVFEGER++TKD  LLG+FDLSGIPPAPRG PQIEVTF++DANGILNV A+DK +GK + ITI NDKGRLSQ            + EED+K
Sbjct:  404 TAGGVMTKLIERNSRIPCKQTKIFSTYADNQPGVSIQVFEGERAMTKDNNLLGQFDLSGIPPAPRGVPQIEVTFDLDANGILNVAAKDKSSGKEKNITIKNDKGRLSQADIDRMVSEAEKYREEDEK 530          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.184e-40
Identity = 81/127 (63.78%), Postives = 96/127 (75.59%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDKK 383
            T GGVMT LI RNT +PTKKS++F+TY D Q  V IQV+EGER+ TKD  LLGKF+L+GIPPAPRG PQIEVTF++DANGILNV A DK TGKS +ITITNDKGRLS+            +  ED++
Sbjct:  403 TAGGVMTPLIKRNTTVPTKKSEIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVSASDKTTGKSNRITITNDKGRLSKEEIERMVNEAEKYKAEDEE 529          
BLAST of CX289225 vs. ExPASy Swiss-Prot
Match: HSP71_PONAB (Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.184e-40
Identity = 81/126 (64.29%), Postives = 96/126 (76.19%), Query Frame = 3
Query:    3 TVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNDKGRLSQXXXXXXXXXXXXFAEEDK 380
            T GGVMT LI RN+ IPTK++Q+FTTY D Q  V IQV+EGER++TKD  LLG+F+LSGIPPAPRG PQIEVTF++DANGILNV A DK TGK+ KITITNDKGRLS+            +  ED+
Sbjct:  405 TAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAEKYKAEDE 530          
The following BLAST results are available for this feature:
BLAST of CX289225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_MAIZE4.071e-4165.12Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]
GRP78_CANGA4.071e-4167.2078 kDa glucose-regulated protein homolog OS=Candid... [more]
HSP71_ARATH5.316e-4165.12Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP70_PENCI5.316e-4165.87Heat shock 70 kDa protein (Fragment) OS=Penicilliu... [more]
HSP7D_MANSE6.943e-4164.34Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HSP72_ARATH6.943e-4165.89Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP7A_CAEEL9.068e-4175.00Heat shock 70 kDa protein A OS=Caenorhabditis eleg... [more]
HSP72_ANOAL1.184e-4064.57Heat shock protein 70 A2 OS=Anopheles albimanus GN... [more]
HSP71_PUCGR1.184e-4063.78Heat shock protein HSS1 OS=Puccinia graminis GN=HS... [more]
HSP71_PONAB1.184e-4064.29Heat shock 70 kDa protein 1 OS=Pongo abelii GN=HSP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02010F02SK IF1 Citrus clementina cDNA clone C02010F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289225 ID=CX289225; Name=CX289225; organism=Citrus clementina; type=EST; length=389bp
AGACAGTTGGTGGGGTGATGACCAAGTTGATCCCAAGAAACACGGTCATT
CCAACCAAGAAATCTCAAGTTTTCACCACTTATCAAGACCAGCAGACTAC
AGTTTCCATTCAGGTTTTTGAAGGTGAAAGGAGTCTCACAAAGGATTGCA
GATTGCTTGGGAAATTCGATCTTTCTGGAATTCCTCCAGCTCCTAGGGGA
ACCCCTCAAATTGAAGTCACATTTGAAGTTGATGCAAATGGTATCTTAAA
TGTAAAGGCAGAAGACAAGGGCACAGGCAAATCAGAGAAAATTACCATCA
CAAATGACAAGGGTCGCCTGAGCCAGGAGGAGATTGAGCGTATGGTTCGT
GAGGCTGAAGAATTTGCCGAGGAGGACAAGAAAGTAAAG
back to top