CX289226

Overview
NameCX289226
Unique NameCX289226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: PRP45_USTMA (Pre-mRNA-processing protein 45 OS=Ustilago maydis GN=PRP45 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.400e-11
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:  166 KKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYR 387
            +  ++ R+++RDISEK ALG+A   A++  E M D RLFNQ + + +G+  +D YN+YDK LF+     + +YR
Sbjct:  463 RTKQLLREQNRDISEKVALGLAKPTASK--ESMTDSRLFNQGESLAAGYGDEDSYNLYDKPLFSGSSAAAAIYR 534
The following BLAST results are available for this feature:
BLAST of CX289226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PRP45_USTMA7.400e-1141.89Pre-mRNA-processing protein 45 OS=Ustilago maydis ... [more]

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Properties
Property NameValue
Genbank descriptionC02010F03SK IF1 Citrus clementina cDNA clone C02010F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289226 ID=CX289226; Name=CX289226; organism=Citrus clementina; type=EST; length=397bp
AGAGAGGAGTATGAGCATGAGAGAGATAGAGGGAGAGAGAGGGATATGCC
GAAGGAGACAAGGGAGGAGAGGGAAGAGAGGTTGCAGAGGGAGAAACTAC
GTGCGGAGAGACGTCGGGAGAGGGAAAGGGAGAGAAGGTTGGAGGCCAAG
GATGCTGCTATGGGAAAGAAGAGTAAGATTACTAGAGACAGAGATCGTGA
TATTAGTGAGAAATTTGCTCTTGGCATGGCCTCGACTGGGGCGGCAAGAG
GAGGTGAGGTTATGTATGATCAAAGGCTGTTCAACCAGGAGAAAGGAATG
GATTCTGGTTTTGCCACTGATGACCAGTACAATGTGTATGACAAGGGCCT
GTTTACTGCTCAGCCCACACTTTCAACCCTATATAGGCCCAAGAAAG
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