CX289237

Overview
NameCX289237
Unique NameCX289237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.511e-26
Identity = 63/120 (52.50%), Postives = 78/120 (65.00%), Query Frame = 3
Query:   30 AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 389
            AF+QI N A   RY SG  F    L +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPVVFFE   LY L  EE+PED+Y++PL +AEV+R+G DIT++
Sbjct:   90 AFNQISNNAGMLRYTSGGNFTLP-LVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQ-EEIPEDEYLIPLDKAEVVRKGKDITIL 207          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 2.119e-25
Identity = 59/144 (40.97%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            FG  +   D +  + A+ RYRSG ++    +T+R+P+G   H    H+ S E      PG+KVVIP +P  AKGLL+S IRD +PVVF E   LYR   +EVPE++Y + L +A+V REG+D++++ +GA +    +A  + EK
Sbjct:   84 FGFVYEVMDSVSGQMARMRYRSGGRWT-SPVTIRSPFGGGVHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIRDNDPVVFLEHMKLYRSFRQEVPEEEYTIELGKADVKREGTDLSIITYGAMVHESLKAADELEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.119e-25
Identity = 63/159 (39.62%), Postives = 93/159 (58.49%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY----------------RLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQAC----LDAE 440
            +PA DQ+++EAA+ RYRS   F    +TVR P G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++CI + +PV+F EPK LY                +    +VP+  Y +PL +A ++R G+ +T++ +G  + + + A     LDAE
Sbjct:  101 YPASDQLISEAARLRYRSAGDFIVP-MTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAAADETGLDAE 258          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 2.119e-25
Identity = 61/131 (46.56%), Postives = 81/131 (61.83%), Query Frame = 3
Query:   33 FDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 425
            FDQ++N+ AKFRY  G +     +TVR  YGA       HSQS    F  +PGLK V+P +P  AKGLLL+ I D +PV FFE K  Y +   EVPED Y +PL +A++ REG+D+TL   G Q++   +A
Sbjct:  104 FDQVINQGAKFRYMFGGKAQVP-ITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFFFEDKTSYNMK-GEVPEDYYTIPLGKADIKREGNDVTLFAVGKQVNTALEA 232          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.373e-24
Identity = 61/143 (42.66%), Postives = 81/143 (56.64%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAE 440
            F     A DQI+N AAK  Y SG Q     +  R P GA       HSQ   A++ H+PGLKVV+P +   AKGLL + IRDPNPV+F E + LY  S E    DD++LP+ +A + R G D TLV +G  ++   +A  + E
Sbjct:  218 FNFAMQAIDQIINSAAKTLYMSGGQMGAP-IVFRGPSGAAARVAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVPKLDDFVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELE 359          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.794e-24
Identity = 61/135 (45.19%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   30 AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLD 434
            AF+QI N A   RY SG  F    + +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPV+FFE   LY L  +E+P D+Y LPL +AE++R+G D+T++ +      + QA +D
Sbjct:   90 AFNQISNNAGMLRYTSGGNFQIP-IVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYNLK-DELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVD 222          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.219e-24
Identity = 60/120 (50.00%), Postives = 76/120 (63.33%), Query Frame = 3
Query:   30 AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 389
            AF+QI N A   RY SG  F    L +R P G     G  HSQ  EA+F  +PGLK+V   +P  AKGLL S IRD NPVVFFE   LY L  EE+P+++Y LPL++ E +R+G DIT++
Sbjct:   90 AFNQISNNAGMLRYTSGGNFTLP-LVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQ-EEIPQEEYFLPLNKVEFVRKGKDITIL 207          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +    +A  + EK
Sbjct:   88 FEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +    +A  + EK
Sbjct:   88 FEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +    +A  + EK
Sbjct:   88 FEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEK 226          
The following BLAST results are available for this feature:
BLAST of CX289237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_PORPU9.511e-2652.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACSU2.119e-2540.97Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEAE2.119e-2539.622-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ACOB_BACSU2.119e-2546.56Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_RHIME1.373e-2442.66Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL1.794e-2445.19Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE5.219e-2450.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW1.163e-2340.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU1.163e-2340.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS1.163e-2340.71Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC02010G03SK IF1 Citrus clementina cDNA clone C02010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289237 ID=CX289237; Name=CX289237; organism=Citrus clementina; type=EST; length=443bp
GGGCTGCAGGATTCGGACGAGGTTTTCCAGCTTTTGATCAGATTGTCAAT
GAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATTGTGGAGG
ATTAACAGTAAGAGCCCCTTATGGAGCTGTGGGCCATGGTGGACACTATC
ACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTG
GTCATCCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGTCATGCAT
TCGTGATCCGAACCCTGTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTT
TGTCTGTAGAAGAGGTTCCTGAGGATGATTATATGTTGCCTTTATCAGAG
GCAGAGGTGATTCGAGAAGGCAGTGACATAACACTTGTTGGCTGGGGAGC
ACAACTCTCTATCATGGAGCAGGCCTGTTTAGATGCTGAAAAG
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