CX289237

Overview
NameCX289237
Unique NameCX289237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +    +A  + EK
Sbjct:   88 FEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +    +A  + EK
Sbjct:   88 FEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            F  FD I  + A+ R+RSG       +T+R+P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +    +A  + EK
Sbjct:   88 FEVFDAIAGQIARTRFRSGGT-KTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.163e-23
Identity = 56/128 (43.75%), Postives = 77/128 (60.16%), Query Frame = 3
Query:   15 GRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWG 398
            G  FPA  QI   AA+ R RS   +    L VR P G       +HS++ EA +  + GLK V+P +P   KGL L+ I  P+PV+FFEPK LYR   +E+P D Y +P+ EA +I EGS++T+V +G
Sbjct:   87 GFSFPAMFQIFVHAARIRNRSRGVYTAP-LVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYRAFRQEIPSDYYTVPIGEANLISEGSELTIVSYG 213          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.518e-23
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            +  FD++  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S I+  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DITL+ +GA +    +A  + EK
Sbjct:   88 YEVFDEVAGQIARTRFRSGGT-KPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.518e-23
Identity = 56/140 (40.00%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            +  FD++  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S I+  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DITL+ +GA +    +A  + EK
Sbjct:   88 YEVFDEVAGQIARTRFRSGGT-KPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSFREEVPEEEYKIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.518e-23
Identity = 57/140 (40.71%), Postives = 82/140 (58.57%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            F  FD I  + A+ R+RSG       +T+R P+G   H    H+ + E      PGLKVVIP  P  AKGLL+S IR  +PVV+ E   LYR   EEVPE++Y + + +A V +EG+DI+++ +GA +    +A  + EK
Sbjct:   88 FEVFDAIAGQIARTRFRSGGT-KTAPVTIRGPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLYRSFREEVPEEEYTIDIGKANVKKEGNDISIITYGAMVQESMKAAEELEK 226          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.983e-23
Identity = 60/134 (44.78%), Postives = 78/134 (58.21%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI 413
            F     AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + HVPGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VPE    +P  +A+++REGS +T+V +  Q+ +
Sbjct:   83 FNFAMQAFDHIVNSAAKTHYMSGGQAKCP-IVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPETIEPIPFGQAKILREGSSVTIVTFSIQVKL 214          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 59/134 (44.03%), Postives = 78/134 (58.21%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI 413
            F     AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPVVF E + LY  S  +VP+    +P  +A+++REGS +T+V +  Q+ +
Sbjct:   83 FNFAMQAFDHIVNSAAKTHYMSGGQVKCP-IVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLENEILYGHSF-DVPKTIEPIPFGQAKILREGSSVTIVTFSIQVKL 214          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 3
Query:   15 GRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWG 398
            G  FPA  QI   AA+ R RS   + C  + VR P G       +HS++ EA +  + GLK V+P +P   KGL L+ +  P+PVVFFEPK LYR   +E+P D Y +P+ +A +I +G+++T+V +G
Sbjct:   88 GFSFPAMFQIFTHAARIRNRSRGVYTCP-IIVRMPMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLYRAFRQEIPADYYTVPIGQANLISQGNNLTIVSYG 214          
The following BLAST results are available for this feature:
BLAST of CX289237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAAR1.163e-2340.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN1.163e-2340.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM1.163e-2340.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCGE1.163e-2343.75Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES1.518e-2340.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ1.518e-2340.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAC1.518e-2340.71Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE1.983e-2344.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN4.418e-2344.03Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN4.418e-2341.41Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC02010G03SK IF1 Citrus clementina cDNA clone C02010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289237 ID=CX289237; Name=CX289237; organism=Citrus clementina; type=EST; length=443bp
GGGCTGCAGGATTCGGACGAGGTTTTCCAGCTTTTGATCAGATTGTCAAT
GAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATTGTGGAGG
ATTAACAGTAAGAGCCCCTTATGGAGCTGTGGGCCATGGTGGACACTATC
ACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTG
GTCATCCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGTCATGCAT
TCGTGATCCGAACCCTGTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTT
TGTCTGTAGAAGAGGTTCCTGAGGATGATTATATGTTGCCTTTATCAGAG
GCAGAGGTGATTCGAGAAGGCAGTGACATAACACTTGTTGGCTGGGGAGC
ACAACTCTCTATCATGGAGCAGGCCTGTTTAGATGCTGAAAAG
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