CX289237

Overview
NameCX289237
Unique NameCX289237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.418e-23
Identity = 62/159 (38.99%), Postives = 91/159 (57.23%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE----------------EVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI----MEQACLDAE 440
            +PA DQIV+E A+ RYRS  +F    LT+R P G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++ I   +PV+F EPK LY    +                 VP+  Y +PL +A + R G+D++++ +G  + +     E++ +DAE
Sbjct:   90 YPASDQIVSEMARLRYRSAGEF-IAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPHSAVPDGYYTVPLDKAAITRPGNDVSVLTYGTTVYVAQVAAEESGVDAE 247          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI 413
            F     AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VP+    +P S+A++++EGS++T+V +  Q+ +
Sbjct:   83 FNFAMQAFDHIVNSAAKTHYMSGGQVKCP-IVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKL 214          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI 413
            F     AFD IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + H+PGLKVV P S    KGL+L+ IRD NPV+F E + LY  S  +VP+    +P S+A++++EGS++T+V +  Q+ +
Sbjct:   83 FNFAMQAFDHIVNSAAKTHYMSGGQVKCP-IVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSF-DVPDIIEPIPFSKAKILKEGSNVTIVTFSIQVKL 214          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 3
Query:   33 FDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWG 398
            FDQI N+AAKFRY  G +     + +RA  GA       HSQ     F H+PGLKVV P +P   KGLL+  IRD +PV+F E K LY L   EVPE  Y +P  EA ++R+G D+++V +G
Sbjct:  101 FDQIFNQAAKFRYMFGGKAETP-VVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCEHKNLYGLE-GEVPEGAYAIPFGEANIVRDGKDVSIVTYG 220          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 9.843e-23
Identity = 59/132 (44.70%), Postives = 81/132 (61.36%), Query Frame = 3
Query:   30 AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 425
            AF+QI N A    Y SG  ++   L +R P G        HSQ  EA+F  VPGLK+V   +P  AKGLL + IRD NPV+F E   LY L  +E+P+ +Y+LPL +A+V+REGSD+T++ +   L  + QA
Sbjct:   91 AFNQISNNAGMLHYTSGGNWSIP-LVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYNLK-QEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQA 220          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.203e-20
Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    9 GFGRGFP--AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 389
            G   GF   AF+QI N A    Y SG  F    L VR P G     G  HSQ  E++F  VPGL++V   +P  AKGL+ S IR  NP++FFE   LY +  E +P+ +Y++PL +AE++R G+ IT++
Sbjct:   81 GMNMGFLLLAFNQIANNAGMLHYTSGGNFTTP-LVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLYNIK-ENIPQKEYLVPLEKAELVRSGNQITIL 207          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.203e-20
Identity = 56/129 (43.41%), Postives = 73/129 (56.59%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLV 389
            F     A D I+N AAK  Y S  Q N   +  R P GA    G  HSQ   A++  VPGLKV+ P S   A+GLL + IRDP+PVVF E + LY  S    EE  +  + LP+ +A++ REG D+T+V
Sbjct:  116 FNFSMQAIDHIINSAAKSNYMSAGQINVP-IVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIV 243          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.501e-20
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSI 413
            F     A D IVN AAK  Y SG Q  C  +  R P GA       HSQ+  A + ++PGLKVV P S    KGL+++ IRD NPV+F E + LY  S  ++ E+   +P  +A+V++EG  +T+V +  Q+ +
Sbjct:   83 FNFAMQAMDHIVNSAAKTHYMSGGQVRCP-IVFRGPNGAASRVAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITAIRDDNPVIFLENEILYGHSF-DISENVEPIPFGKAKVLKEGDSVTIVTFSIQVKL 214          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   30 AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLS 410
            A D I+N AAK  Y SG Q  C  +  R P GA    G  H+Q+   ++  VPGL V+ P     AKGLL + IR  +PVVF E + LY  + +    DD++LP+ +A +IREG D+T+V +   +S
Sbjct:  225 AIDHIINSAAKTHYMSGGQVRCP-IVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKMDDFVLPIGKARIIREGKDVTIVSYSIGVS 350          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.971e-20
Identity = 59/147 (40.14%), Postives = 80/147 (54.42%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLVGW--GAQLSIMEQACLDA 437
            F     A DQI+N AAK  Y S  +     +  R P GA       HSQ   A++ H PGLKVV P S   AKGLL + IRD NPVVF E + LY  S    +EV  DD+++P+ +A++ R G  +T+V +  G + S+     L+A
Sbjct:  105 FNFSMQAIDQIINSAAKTYYMSAGRVPVP-IVFRGPNGAAAGVAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEA 250          
The following BLAST results are available for this feature:
BLAST of CX289237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODBB_PSEPU4.418e-2338.992-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODPB_RICTY5.770e-2343.28Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR5.770e-2343.28Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH5.770e-2346.72Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_CYAME9.843e-2344.70Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU1.203e-2042.64Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ARATH1.203e-2043.41Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICBR3.501e-2039.55Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYMMO5.971e-2040.94Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CAEEL5.971e-2040.14Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionC02010G03SK IF1 Citrus clementina cDNA clone C02010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289237 ID=CX289237; Name=CX289237; organism=Citrus clementina; type=EST; length=443bp
GGGCTGCAGGATTCGGACGAGGTTTTCCAGCTTTTGATCAGATTGTCAAT
GAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATTGTGGAGG
ATTAACAGTAAGAGCCCCTTATGGAGCTGTGGGCCATGGTGGACACTATC
ACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTG
GTCATCCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGTCATGCAT
TCGTGATCCGAACCCTGTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTT
TGTCTGTAGAAGAGGTTCCTGAGGATGATTATATGTTGCCTTTATCAGAG
GCAGAGGTGATTCGAGAAGGCAGTGACATAACACTTGTTGGCTGGGGAGC
ACAACTCTCTATCATGGAGCAGGCCTGTTTAGATGCTGAAAAG
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