CX289237

Overview
NameCX289237
Unique NameCX289237
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length443
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.774e-17
Identity = 53/129 (41.09%), Postives = 73/129 (56.59%), Query Frame = 3
Query:    9 GFGRGFP--AFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLV 389
            G   GF   AF+QI N  +  +Y SG  FN   + +R P G        HSQ  E+ F  +PGL++V   +   AKGLL S I +  P++F E   LY L    VP+++Y LPL +AEV+R GSD+T+V
Sbjct:   81 GMNMGFMLLAFNQISNNLSMLQYTSGGNFNIP-VVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSAIIEKKPILFLEHVLLYNLK-GFVPDEEYYLPLDKAEVVRSGSDVTIV 207          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.731e-17
Identity = 54/130 (41.54%), Postives = 69/130 (53.08%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLVG 392
            F     A D IVN AA+  Y SG    C  +  R P G        HSQ    ++  +PGLKVV P S   A+GLL + IRDPNPVV  E + LY  +    +E   +D++LP   A+V R G DIT+VG
Sbjct:  118 FNFSMQAIDHIVNSAARTLYMSGGIQACP-IVFRGPNGPAAAVAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVG 246          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.179e-17
Identity = 52/147 (35.37%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSV---EEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 443
            F     A D I+N AAK  Y S  Q +   +  R   G     G  HS    +++   PGLKV++P S   A+GLL + IRDP+PVVF E + LY  S     EV +  + LP+ +A++ REG D+T+  +   +    +A    EK
Sbjct:  106 FNFSMQAIDHIINSAAKSNYMSAGQISVP-IVFRGLNGDAAGVGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEK 251          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.070e-17
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE---EVPEDDYMLPLSEAEVIREGSDITLV 389
            F     A DQ++N AAK  Y S        +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y ++ E   E    D+++P+ +A++ R+G+ IT+V
Sbjct:  113 FNFSMQAIDQVINSAAKTYYMSAG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVV 240          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.054e-16
Identity = 50/129 (38.76%), Postives = 71/129 (55.04%), Query Frame = 3
Query:   12 FGRGFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVE---EVPEDDYMLPLSEAEVIREGSDITLV 389
            F     A DQ++N AAK  Y S        +  R P GA       HSQ   A++ H PGLKVV P +   AKGL+ S IRD NPVV  E + +Y ++ E   E    D+++P+ +A++ R+G+ IT+V
Sbjct:  113 FNFSMQAIDQVINSAAKTYYMSAG-LQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVV 240          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.054e-16
Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = 3
Query:   36 DQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPE---DDYMLPLSEAEVIREGSDITLV 389
            D I+N AAK  Y S  +F+   +  R   GA       HSQ   A+F H PG+KVV+P     A+GLL + +RD NPV+  E + LY +     PE    D++LP  +A++ R G DIT+V
Sbjct:  122 DHIINSAAKAHYMSAGRFHVP-IVFRGANGAAVGVAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAAVRDDNPVICLENEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIV 241          
BLAST of CX289237 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.798e-16
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 3
Query:   24 FPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGG--HYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQA 425
            FP FDQI  + AK   R     +   + +R P+G  GH G   +H ++PEA+F H  GL++V P +P  A  ++   I   +PV+FFEP   Y     EV   +  LPL  + ++R G+D T+V W   + +  +A
Sbjct:  101 FPGFDQITTQLAKMANRHSGAVSMP-VVIRIPHG--GHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIFFEPMSRY-WPKGEVDTLENPLPLHASRIVRSGTDATIVAWAGMVPVALRA 232          
The following BLAST results are available for this feature:
BLAST of CX289237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CYACA2.774e-1741.09Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_SCHPO4.731e-1741.54Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PEA6.179e-1735.37Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT8.070e-1738.76Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE1.054e-1638.76Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ASCSU1.054e-1639.67Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_LEIXX1.798e-1634.56Pyruvate dehydrogenase E1 component subunit beta O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02010G03SK IF1 Citrus clementina cDNA clone C02010G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289237 ID=CX289237; Name=CX289237; organism=Citrus clementina; type=EST; length=443bp
GGGCTGCAGGATTCGGACGAGGTTTTCCAGCTTTTGATCAGATTGTCAAT
GAAGCTGCTAAGTTCAGATACAGGAGTGGAAATCAATTTAATTGTGGAGG
ATTAACAGTAAGAGCCCCTTATGGAGCTGTGGGCCATGGTGGACACTATC
ACTCGCAATCTCCTGAAGCTTTCTTTTGTCACGTTCCTGGTCTCAAAGTG
GTCATCCCTCGAAGCCCACGACAAGCAAAAGGATTATTGCTGTCATGCAT
TCGTGATCCGAACCCTGTTGTCTTTTTTGAGCCAAAGTGGCTTTACCGTT
TGTCTGTAGAAGAGGTTCCTGAGGATGATTATATGTTGCCTTTATCAGAG
GCAGAGGTGATTCGAGAAGGCAGTGACATAACACTTGTTGGCTGGGGAGC
ACAACTCTCTATCATGGAGCAGGCCTGTTTAGATGCTGAAAAG
back to top