CX289241

Overview
NameCX289241
Unique NameCX289241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289241 vs. ExPASy Swiss-Prot
Match: GLIP6_ARATH (GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=GLIP6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 34/139 (24.46%), Postives = 69/139 (49.64%), Query Frame = 2
Query:    2 DAIYIVGAGSGDFLQNYYAKPSLNKVYTPEQYSSMLVKSFSSFIKNLYGLGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSC 418
            ++++++  GS D   NY+  P      +P+ Y + ++   +  I  +Y LGAR+    SL P+GC PA  +L       C  ++N+ A+ +NK++    + +  + PG   V   ++         P+++GF + + +C
Sbjct:  157 ESLFLLETGSNDIF-NYFL-PFRAPTLSPDAYVNAMLDQVNKTIDQIYKLGARRIAFFSLGPVGCVPARAMLPNAPTNKCFGKMNVMAKMYNKRLEDIVNIIPTKYPGAIAVFGAVYGITHRFQTYPARYGFSDVSNAC 293          
BLAST of CX289241 vs. ExPASy Swiss-Prot
Match: GDL76_ARATH (GDSL esterase/lipase At5g14450 OS=Arabidopsis thaliana GN=At5g14450 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 33/110 (30.00%), Postives = 52/110 (47.27%), Query Frame = 2
Query:  107 LVKSFSSFIKNLYGLGARKFGVTSLPPLGCFPAARILFGNHG------RGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSC 418
            +V   +S ++N+Y  G R F V +  P GC P      G          GCV   N  A +FN+K+  +  NL+K+L    I   D++   +E++ +P K GF    + C
Sbjct:  207 IVNHLASAVRNIYQQGGRTFWVHNTGPFGCLPVNMFYMGTPAPGYLDKSGCVKAQNEMAMEFNRKLKETVINLRKELTQAAITYVDVYTAKYEMMSNPKKLGFANPLKVC 316          
BLAST of CX289241 vs. ExPASy Swiss-Prot
Match: GDL2_ARATH (GDSL esterase/lipase At1g09390 OS=Arabidopsis thaliana GN=At1g09390 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 39/142 (27.46%), Postives = 71/142 (50.00%), Query Frame = 2
Query:    2 DAIYIVGAGSGDFLQNYYAKPSLNKVYTPEQYSSMLVKSFSSFIKNLYGLGARKFGVTSLPPLGCFPAARILFGNHG---RGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSC 418
            +A+Y++  G  D   ++    S ++V    +    ++    S IK LY  G RKF V +  PLGC P    +  + G    GC++  N AA+ FN+ ++    +L+ +L    IV  DI+   ++L+ + + +GF +   +C
Sbjct:  164 NALYMIDIGQNDIADSFSKGLSYSRVV---KLIPNVISEIKSAIKILYDEGGRKFWVHNTGPLGCLPQKLSMVHSKGFDKHGCLATYNAAAKLFNEGLDHMCRDLRTELKEANIVYVDIYAIKYDLIANSNNYGFEKPLMAC 302          
BLAST of CX289241 vs. ExPASy Swiss-Prot
Match: GDL67_ARATH (GDSL esterase/lipase At4g28780 OS=Arabidopsis thaliana GN=At4g28780 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 37/139 (26.62%), Postives = 65/139 (46.76%), Query Frame = 2
Query:    5 AIYIVGAGSGDFLQNYYAKPSLNKVYTP-EQYSSMLVKSFSSFIKNLYGLGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSC 418
            A+ ++  G  DF+ NY+   S  +  +   ++S +L+  +   + +LY LGAR+  VT   PLGC PA     G+    C      AA  FN  +      L +++     +  + F    + + +P +FGFV +  +C
Sbjct:  161 ALVLMTLGGNDFVNNYFFPISTRRRQSSLGEFSQLLISEYKKILTSLYELGARRVMVTGTGPLGCVPAELASSGSVNGECAPEAQQAAAIFNPLLVQMLQGLNREIGSDVFIGANAFNTNADFINNPQRFGFVTSKVAC 299          
BLAST of CX289241 vs. ExPASy Swiss-Prot
Match: GDL28_ARATH (GDSL esterase/lipase At1g71250 OS=Arabidopsis thaliana GN=At1g71250 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 36/141 (25.53%), Postives = 70/141 (49.65%), Query Frame = 2
Query:    5 AIYIVGAGSGDFLQNYYAKPSLNKV---YTPEQYSSMLVKSFSSFIKNLYGLGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSC 418
            ++ ++  GS D++ NY   P+L      + P  ++++L+  ++  +  LY LG RK  +  + PLGC P  R    +    CV  +N     FN+ + S    L ++ PG   V  + +  + +++ +P+ +GF    R+C
Sbjct:  170 SLVVLVFGSNDYINNYLM-PNLYDSSIRFRPPDFANLLLSQYARQLLTLYSLGLRKIFIPGVAPLGCIPNQRARGISPPDRCVDSVNQILGTFNQGLKSLVDQLNQRSPGAIYVYGNTYSAIGDILNNPAAYGFSVVDRAC 309          
BLAST of CX289241 vs. ExPASy Swiss-Prot
Match: GDL61_ARATH (GDSL esterase/lipase At4g01130 OS=Arabidopsis thaliana GN=At4g01130 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 41/145 (28.28%), Postives = 68/145 (46.90%), Query Frame = 2
Query:    5 AIYIVGAGSGDFLQNYYAKPSLNKVYTPEQYSSMLVKSFSSFIKNLYGLGARKFGVTSLPPLGCFPAARILFGN-------HGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSC 418
            ++Y    G  DF  N  A   + +V   + Y   ++   +  IK +YG+G R F V +L P+GC+PA  IL G           GC+  +N A + +N  +N + S  + +L    ++  D  K L +L Q P  +G     ++C
Sbjct:  168 SLYTFYIGQNDFTSNL-ASIGVERV---KLYLPQVIGQIAGTIKEIYGIGGRTFLVLNLAPVGCYPA--ILTGYTHTDADLDKYGCLIPVNKAVKYYNTLLNKTLSQTRTELKNATVIYLDTHKILLDLFQHPKSYGMKHGIKAC 306          
BLAST of CX289241 vs. ExPASy Swiss-Prot
Match: GDL21_ARATH (GDSL esterase/lipase At1g54030 OS=Arabidopsis thaliana GN=At1g54030 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 43/140 (30.71%), Postives = 68/140 (48.57%), Query Frame = 2
Query:    2 DAIYIVGAGSGDFLQNYYAKPSLNKVYTPEQ-YSSMLVKSFSSFIKNLYGLGARKFGVTSLPPLGCFPAARILFGNHGRGCVSRINIAAQQFNKKVNSSASNLQKQLPGLKIVIFDIFKPLFELVQSPSKFGFVEATRSC 418
            +AIY++  GS D+L   YAK + +   T +Q +   ++ +  + IK +YG G RKF   +L PLGC PA +   GN  + CV   +  A   NKK+      L ++L G +   +D F  +   V     + F     +C
Sbjct:  165 EAIYLIYIGSDDYLS--YAKSNPSPSDTQKQAFVDQVITTIKAEIKVVYGSGGRKFAFQNLAPLGCLPAVKQASGN-VQECVKLPSEMAALHNKKLLQLLVELSRELNGFQYSFYDFFSSIQNRVIKSKTYTFETGNAAC 301          
The following BLAST results are available for this feature:
BLAST of CX289241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
GLIP6_ARATH4.360e-1124.46GDSL esterase/lipase 6 OS=Arabidopsis thaliana GN=... [more]
GDL76_ARATH4.360e-1130.00GDSL esterase/lipase At5g14450 OS=Arabidopsis thal... [more]
GDL2_ARATH5.695e-1127.46GDSL esterase/lipase At1g09390 OS=Arabidopsis thal... [more]
GDL67_ARATH7.438e-1126.62GDSL esterase/lipase At4g28780 OS=Arabidopsis thal... [more]
GDL28_ARATH7.438e-1125.53GDSL esterase/lipase At1g71250 OS=Arabidopsis thal... [more]
GDL61_ARATH9.714e-1128.28GDSL esterase/lipase At4g01130 OS=Arabidopsis thal... [more]
GDL21_ARATH9.714e-1130.71GDSL esterase/lipase At1g54030 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC02010G07SK IF1 Citrus clementina cDNA clone C02010G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289241 ID=CX289241; Name=CX289241; organism=Citrus clementina; type=EST; length=418bp
GGATGCAATATACATAGTGGGTGCTGGGAGTGGTGACTTTCTTCAGAATT
ACTATGCCAAACCATCGCTTAACAAAGTCTATACTCCTGAACAGTATAGC
TCAATGCTTGTCAAATCTTTCTCAAGTTTTATCAAGAATTTGTATGGATT
GGGAGCAAGGAAATTTGGAGTCACTTCATTGCCACCGCTGGGTTGCTTTC
CCGCAGCAAGAATTTTATTCGGTAATCATGGAAGGGGCTGTGTCTCTAGA
ATCAATATTGCTGCTCAACAATTTAATAAGAAGGTCAACTCTTCAGCATC
AAATCTCCAAAAGCAACTTCCTGGTCTGAAAATTGTGATTTTCGACATTT
TCAAGCCACTCTTTGAACTTGTCCAGTCCCCTTCAAAATTTGGCTTCGTG
GAAGCAACAAGAAGTTGC
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