CX289244

Overview
NameCX289244
Unique NameCX289244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.475e-14
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIF+FV N LPPT A+MS IYDE KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_PHYIN (Autophagy-related protein 8 OS=Phytophthora infestans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIF++NVLPPT A+MS IY+E+KD DGFLY+TYSGENTFG
Sbjct:   73 KAIFIFINNVLPPTAALMSNIYEEQKDVDGFLYITYSGENTFG 115          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFV N+LPPT AIMS IY+E KDEDGFLY++YSGENTFG
Sbjct:   75 KAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_PICPA (Autophagy-related protein 8 OS=Pichia pastoris GN=ATG8 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.286e-14
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIF+D++LPPT A+MS +Y+E KDEDGFLYV YSGENTFG
Sbjct:   74 KAIFIFIDDILPPTAALMSKVYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_SCHPO (Autophagy-related protein 8 OS=Schizosaccharomyces pombe GN=atg8 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIF+D +LPPT A+MS IY+E K EDGFLY+TYSGENTFG
Sbjct:   74 KAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIF+FV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117          
The following BLAST results are available for this feature:
BLAST of CX289244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
ATG8C_ARATH1.475e-1481.40Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8_PHYIN2.516e-1479.07Autophagy-related protein 8 OS=Phytophthora infest... [more]
ATG8D_ARATH2.516e-1481.40Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8C_ORYSJ2.516e-1481.40Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI2.516e-1481.40Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8B_ORYSJ2.516e-1481.40Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI2.516e-1481.40Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8_PICPA3.286e-1476.74Autophagy-related protein 8 OS=Pichia pastoris GN=... [more]
ATG8_SCHPO4.291e-1476.74Autophagy-related protein 8 OS=Schizosaccharomyces... [more]
ATG8B_ARATH4.291e-1479.07Autophagy-related protein 8b OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC02010G10SK IF1 Citrus clementina cDNA clone C02010G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289244 ID=CX289244; Name=CX289244; organism=Citrus clementina; type=EST; length=378bp
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTCCC
ATCGAATTTAAATTATTCGCAATCATCAGTCTGATACCACATAGTTTGAA
CCGGCTTTATCCAAGCATAAAAGGTCATGTAAATAAAAAGCCGGTTTATG
ACCGGCACAAAGCCAGAAAACAGAAACCCTAAATTCAAGATGGGTAGATT
AACAAACGAAACGTTGGTAGAGGAAAAAGGGTAGCGGCAGATTATGCTAT
CCAAATGTGTTTTCACCACTGTAAGTAACATAGAGAAACCCATCTTCATC
CTTTTTTTCATCATATATGGGAGACATTATTGCTCCTGTAGGCGGGAGAA
CATTGTCCACAAATATAAAGATTGCCTT
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