CX289244

Overview
NameCX289244
Unique NameCX289244
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig183 contig Ccv1_Contig183:1..378. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.291e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIF+FV N LPPT A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_LACBI (Autophagy-related protein 8 OS=Laccaria bicolor GN=ATG8 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.605e-14
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVD VLPPT A+MS IY+E KDED FLYV+YSGENTFG
Sbjct:   74 KAIFIFVDEVLPPTAALMSAIYEEHKDEDNFLYVSYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_CRYNE (Autophagy-related protein 8 OS=Cryptococcus neoformans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.320e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVD++LPPT A+MS IYDE KDEDGFLYV Y+ ENTFG
Sbjct:   75 KAIFIFVDDILPPTAALMSSIYDEHKDEDGFLYVLYASENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.320e-14
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIF+FV N LPPT ++MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.320e-14
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIF+FV N LPPT ++MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   75 KAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_USTMA (Autophagy-related protein 8 OS=Ustilago maydis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.560e-14
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFVD VLP T A+MS IY+E KDEDGFLYV+YSGENTFG
Sbjct:   74 KAIFIFVDEVLPATAALMSAIYEEHKDEDGFLYVSYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_DEBHA (Autophagy-related protein 8 OS=Debaryomyces hansenii GN=ATG8 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.560e-14
Identity = 33/43 (76.74%), Postives = 39/43 (90.70%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIF++++LPPT A+MS IY+E KDEDGFLYV YSGENTFG
Sbjct:   74 KAIFIFINDILPPTAALMSTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_YEAST (Autophagy-related protein 8 OS=Saccharomyces cerevisiae GN=ATG8 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.631e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFV++ LPPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct:   74 KAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_YEAS7 (Autophagy-related protein 8 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.631e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFV++ LPPT A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct:   74 KAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX289244 vs. ExPASy Swiss-Prot
Match: ATG8_VANPO (Autophagy-related protein 8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.130e-13
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  250 KAIFIFVDNVLPPTGAIMSPIYDEKKDEDGFLYVTYSGENTFG 378
            KAIFIFV++ LPPT A+MS +Y E KD+DGFLYVTYSGENTFG
Sbjct:   74 KAIFIFVNDTLPPTAALMSAVYQEHKDKDGFLYVTYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CX289244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
ATG8A_ARATH4.291e-1479.07Autophagy-related protein 8a OS=Arabidopsis thalia... [more]
ATG8_LACBI5.605e-1481.40Autophagy-related protein 8 OS=Laccaria bicolor GN... [more]
ATG8_CRYNE7.320e-1479.07Autophagy-related protein 8 OS=Cryptococcus neofor... [more]
ATG8A_ORYSJ7.320e-1476.74Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI7.320e-1476.74Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8_USTMA9.560e-1481.40Autophagy-related protein 8 OS=Ustilago maydis GN=... [more]
ATG8_DEBHA9.560e-1476.74Autophagy-related protein 8 OS=Debaryomyces hansen... [more]
ATG8_YEAST1.631e-1379.07Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_YEAS71.631e-1379.07Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_VANPO2.130e-1376.74Autophagy-related protein 8 OS=Vanderwaltozyma pol... [more]

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Properties
Property NameValue
Genbank descriptionC02010G10SK IF1 Citrus clementina cDNA clone C02010G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289244 ID=CX289244; Name=CX289244; organism=Citrus clementina; type=EST; length=378bp
CCCCCCTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTCCC
ATCGAATTTAAATTATTCGCAATCATCAGTCTGATACCACATAGTTTGAA
CCGGCTTTATCCAAGCATAAAAGGTCATGTAAATAAAAAGCCGGTTTATG
ACCGGCACAAAGCCAGAAAACAGAAACCCTAAATTCAAGATGGGTAGATT
AACAAACGAAACGTTGGTAGAGGAAAAAGGGTAGCGGCAGATTATGCTAT
CCAAATGTGTTTTCACCACTGTAAGTAACATAGAGAAACCCATCTTCATC
CTTTTTTTCATCATATATGGGAGACATTATTGCTCCTGTAGGCGGGAGAA
CATTGTCCACAAATATAAAGATTGCCTT
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