CX289245

Overview
NameCX289245
Unique NameCX289245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER16_ARATH (Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.137e-17
Identity = 49/120 (40.83%), Postives = 67/120 (55.83%), Query Frame = 3
Query:   60 AQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNS--ARGFEVIDNMKAAVER--ACPRVVSCADILTIAAERSVALSGGP 407
            AQL  +FY  +CPNV   + + +++ F        + +RL FHDCFV GCDASILL S +  D      P++ S    GF+ +   K A++R   C   VSCADIL +A    V L+GGP
Sbjct:   23 AQLQTNFYRKSCPNVETIVRNAVRQKFQQTFVTAPATLRLFFHDCFVRGCDASILLASPSEKDH-----PDDKSLAGDGFDTVAKAKQALDRDPNCRNKVSCADILALATRDVVVLTGGP 137          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER73_ARATH (Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.404e-17
Identity = 47/119 (39.50%), Postives = 70/119 (58.82%), Query Frame = 3
Query:   60 AQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSA-RGFEVIDNMKAAVER--ACPRVVSCADILTIAAERSVALSGGP 407
            AQL  +FY ++CPNV   ++ V+++          + +RL FHDCFV+GCDAS+++ ST T  +EK    N + A  GF+V+   K A++   +C   VSCADIL +A    V  + GP
Sbjct:   25 AQLKTNFYGNSCPNVEQIVKKVVQEKIKQTFVTIPATLRLFFHDCFVNGCDASVMIQSTPTNKAEKDHPDNISLAGDGFDVVIKAKKALDAIPSCKNKVSCADILALATRDVVVAAKGP 143          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.057e-17
Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 3
Query:   66 LSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            L  +FY  TCP   + + + +K  +        S +R  FHDC V+ CDAS+LLDST     EK     +   R F  I+ +K A+ER CP VVSC+DIL ++A   +   GGP
Sbjct:   31 LMMNFYKDTCPQAEDIVREQVKLLYKRHKNTAFSWLRNIFHDCAVESCDASLLLDSTRRELGEK-EHDRSFGLRNFRYIEEIKEALERECPGVVSCSDILVLSAREGIEAVGGP 143          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.572e-16
Identity = 45/108 (41.67%), Postives = 63/108 (58.33%), Query Frame = 3
Query:   84 SSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            ++TC +    I   ++K + +D  I   L+RL + DC V+GCD SILL   N   SE+  AP N    GF +ID +K  +E  CP VVSCADIL +A   +V ++G P
Sbjct:   43 TNTCDDAETYIRYQVEKFYKNDSSIAPKLLRLLYSDCMVNGCDGSILLQGPN---SER-TAPQNRGLGGFVIIDKIKQVLESRCPGVVSCADILNLATRDAVHMAGAP 146          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.053e-16
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   66 LSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARG--FEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            L+  +Y  TCP+    + + +           A  +RL FHDCF++GCDAS+L+ +TN+ +  +     N S  G  F+++  +K A+E +CP VVSCADIL  A    V + GGP
Sbjct:   26 LTKDYYQKTCPDFNKIVRETVTPKQGQQPTTAAGTLRLFFHDCFMEGCDASVLI-ATNSFNKAERDDDLNESLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGP 140          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER65_ARATH (Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.682e-16
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 3
Query:   48 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARG--FEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S   A L   +Y  TCP+    + + +           A  +RL FHDCF++GCDAS+L+ +TN+ +  +     N+S  G  F+++  +K A+E +CP VVSCADIL  A    V + GGP
Sbjct:   27 SADVAILRTDYYQKTCPDFHKIVREAVTTKQVQQPTTAAGTLRLFFHDCFLEGCDASVLI-ATNSFNKAERDDDLNDSLPGDAFDIVTRIKTALELSCPGVVSCADILAQATRDLVTMVGGP 147          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER45_ARATH (Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.503e-16
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 3
Query:   60 AQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNS--ARGFEVIDNMKAAVER--ACPRVVSCADILTIAAERSVALSGGP 407
            AQL   FY ++CPNV   + + +++ F        + +RL FHDCFV GCDASI++ S +  D      P++ S    GF+ +   K AV+    C   VSCADIL +A    V L+GGP
Sbjct:   25 AQLRTGFYQNSCPNVETIVRNAVRQKFQQTFVTAPATLRLFFHDCFVRGCDASIMIASPSERDH-----PDDMSLAGDGFDTVVKAKQAVDSNPNCRNKVSCADILALATREVVVLTGGP 139          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.246e-13
Identity = 36/115 (31.30%), Postives = 62/115 (53.91%), Query Frame = 3
Query:   63 QLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            +L  ++Y  +CP     I   ++  +        S +R  FHDC V  CDAS+LL++   ++SE+  +  +   R F+ +  +K A+E+ CP  VSCADI+ ++A   + +  GP
Sbjct:   29 ELEMNYYKESCPKAEEIIRQQVETLYYKHGNTAVSWLRNLFHDCVVKSCDASLLLETARGVESEQ-KSKRSFGMRNFKYVKIIKDALEKECPSTVSCADIVALSARDGIVMLKGP 142          
The following BLAST results are available for this feature:
BLAST of CX289245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER16_ARATH4.137e-1740.83Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=... [more]
PER73_ARATH5.404e-1739.50Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=... [more]
PER42_ARATH7.057e-1739.47Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER61_ARATH1.572e-1641.67Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER41_ARATH2.053e-1637.07Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER65_ARATH2.682e-1636.89Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=... [more]
PER45_ARATH3.503e-1639.17Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=... [more]
PER21_ARATH1.246e-1331.30Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC02010G11SK IF1 Citrus clementina cDNA clone C02010G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289245 ID=CX289245; Name=CX289245; organism=Citrus clementina; type=EST; length=409bp
GTTATCTTCTCGCAGCAGCTCTTCTTGTTGCTTTTGTGCTTGAGGGATCA
CCATCTCAAGCTCAACTTTCTCCATCTTTTTATTCTTCCACATGCCCTAA
TGTATTGAACACTATCGAGGATGTGCTTAAGAAAGCTTTCTCGTCCGATA
TCCGGATCGGTGCCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTGTT
GATGGGTGTGATGCATCGATTTTGCTGGACAGCACTAACACCATAGACAG
CGAGAAATTTGCTGCGCCAAATAACAATTCGGCGAGGGGTTTTGAAGTTA
TTGATAACATGAAAGCTGCCGTTGAAAGGGCATGTCCAAGGGTTGTTTCC
TGCGCTGATATTCTTACTATTGCGGCTGAACGATCCGTTGCTTTGTCAGG
GGGTCCGTC
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