CX289245

Overview
NameCX289245
Unique NameCX289245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PERX_NICSY (Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.786e-36
Identity = 74/116 (63.79%), Postives = 89/116 (76.72%), Query Frame = 3
Query:   60 AQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            AQLS +FY +TCPN LNTI   +++A SS+ R+ ASLIRLHFHDCFV GCDASILLD T +I+SEK A PN  SARGF +I++ K  VE+ CP VVSCADILT+AA  + A  GGP
Sbjct:   27 AQLSATFYDNTCPNALNTIRTSVRQAISSERRMAASLIRLHFHDCFVQGCDASILLDETPSIESEKTALPNLGSARGFGIIEDAKREVEKICPGVVSCADILTVAARDASAAVGGP 142          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PERP7_BRARA (Peroxidase P7 OS=Brassica rapa PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 2.580e-35
Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 3
Query:   63 QLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            QL+ +FYS++CPN+L+T++  +K A SS  R+GAS++RL FHDCFV+GCD SILLD T++   E+ A PN NSARGF VI+++K+AVE+ACP VVSCADIL IAA  SV   GGP
Sbjct:    1 QLTTNFYSTSCPNLLSTVKSGVKSAVSSQPRMGASILRLFFHDCFVNGCDGSILLDDTSSFTGEQNAGPNRNSARGFTVINDIKSAVEKACPGVVSCADILAIAARDSVVQLGGP 115          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER68_ARATH (Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.400e-35
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 3
Query:   45 GSPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGG 404
            GS +QAQL   FYS +CP++L T+  V+++  + + RI ASL+RL FHDCFV+GCDASILLD T +   EK A PNNNS RG+EVID +K+ VER CP VVSCADIL I A  SV L GG
Sbjct:   23 GSQAQAQLRTDFYSDSCPSLLPTVRRVVQREVAKERRIAASLLRLFFHDCFVNGCDASILLDDTRSFLGEKTAGPNNNSVRGYEVIDAIKSRVERLCPGVVSCADILAITARDSVLLMGG 142          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER4_VITVI (Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.747e-35
Identity = 69/118 (58.47%), Postives = 87/118 (73.73%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S AQLS +FYS TCP V +T++  ++ A S + R+GASL+RL FHDCFV+GCDAS+LLD T++   E+ A PN NS RG  VIDN+K+ VE  CP VVSCADI+ IAA  SV + GGP
Sbjct:   23 SSAQLSTNFYSKTCPKVFDTVKSGVQSAVSKERRMGASLLRLFFHDCFVNGCDASVLLDDTSSFTGEQTAVPNKNSIRGLNVIDNIKSQVESVCPGVVSCADIIAIAARDSVVILGGP 140          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER1_ARAHY (Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.747e-35
Identity = 69/115 (60.00%), Postives = 84/115 (73.04%), Query Frame = 3
Query:   60 AQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGG 404
            AQLS +FY++ CPN L+TI+  +  A + + R+GASL+RLHFHDCFV GCDAS+LLD T+    EK A PN NS RGFEVID +K+ VE  CP VVSCADIL +AA  SV   GG
Sbjct:   22 AQLSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGG 136          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER9_ARATH (Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.672e-34
Identity = 70/121 (57.85%), Postives = 85/121 (70.25%), Query Frame = 3
Query:   45 GSPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            G    + L P FY  +CP     +  VL+KA + + R+ ASL+RLHFHDCFV GCDASILLD + TI SEK A PN NS RGF+VID +KA +E+ACP+ VSCADIL +AA  S  LSGGP
Sbjct:   38 GGSFYSNLYPQFYQFSCPQADEIVMTVLEKAIAKEPRMAASLLRLHFHDCFVQGCDASILLDDSATIRSEKNAGPNKNSVRGFQVIDEIKAKLEQACPQTVSCADILALAARGSTILSGGP 158          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER72_ARATH (Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.354e-34
Identity = 67/118 (56.78%), Postives = 84/118 (71.19%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S   L P FY  +CP     ++ ++ KAF  D R+ ASL+RLHFHDCFV GCDASILLDS+ TI SEK + PN NSARGFE+I+ +K A+E+ CP  VSCADIL +AA  S  ++GGP
Sbjct:   29 SGGYLFPQFYDQSCPKAQEIVQSIVAKAFEHDPRMPASLLRLHFHDCFVKGCDASILLDSSGTIISEKRSNPNRNSARGFELIEEIKHALEQECPETVSCADILALAARDSTVITGGP 146          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER4_ARATH (Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.354e-34
Identity = 69/118 (58.47%), Postives = 87/118 (73.73%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            SQAQLSP+FY  TC N L+TI   ++ A S + R+ ASLIRLHFHDCFV+GCDAS++L +T T++SE+ +  N  SARGFEVID  K+AVE  CP VVSCADI+ +AA  +    GGP
Sbjct:   17 SQAQLSPTFYDQTCQNALSTIRSSIRTAISRERRMAASLIRLHFHDCFVNGCDASVMLVATPTMESERDSLANFQSARGFEVIDQAKSAVESVCPGVVSCADIIAVAARDASEYVGGP 134          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER36_ARATH (Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 6.354e-34
Identity = 63/122 (51.64%), Postives = 89/122 (72.95%), Query Frame = 3
Query:   42 EGSPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            + + S A LSP FY ++CPN    ++  +  A+ +D R+ AS++RLHFHDCFV+GCDAS+LLDS+ T++SEK +  N +SARGFEVID +K+A+E  CP  VSCAD+L + A  S+ + GGP
Sbjct:   33 QSTSSVASLSPQFYENSCPNAQAIVQSYVANAYFNDPRMAASILRLHFHDCFVNGCDASVLLDSSGTMESEKRSNANRDSARGFEVIDEIKSALENECPETVSCADLLALVARDSIVICGGP 154          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER70_MAIZE (Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.415e-33
Identity = 68/118 (57.63%), Postives = 83/118 (70.34%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            + AQLSP+FYS +CP  L TI+  +  A + + R+GASL+RLHFHDCFV GCD S+LL+ T T   E+ A PN  S RGF V+DN+KA VE  CP VVSCADIL +AA  SV   GGP
Sbjct:   23 ASAQLSPTFYSRSCPRALATIKAAVTAAVAQEARMGASLLRLHFHDCFVQGCDGSVLLNDTATFTGEQTANPNVGSIRGFGVVDNIKAQVEAVCPGVVSCADILAVAARDSVVALGGP 140          
The following BLAST results are available for this feature:
BLAST of CX289245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PERX_NICSY1.786e-3663.79Lignin-forming anionic peroxidase OS=Nicotiana syl... [more]
PERP7_BRARA2.580e-3560.87Peroxidase P7 OS=Brassica rapa PE=1 SV=3[more]
PER68_ARATH4.400e-3560.00Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=... [more]
PER4_VITVI5.747e-3558.47Peroxidase 4 OS=Vitis vinifera GN=GSVIVT0002396700... [more]
PER1_ARAHY5.747e-3560.00Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 ... [more]
PER9_ARATH1.672e-3457.85Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 ... [more]
PER72_ARATH6.354e-3456.78Peroxidase 72 OS=Arabidopsis thaliana GN=PER72 PE=... [more]
PER4_ARATH6.354e-3458.47Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 ... [more]
PER36_ARATH6.354e-3451.64Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=... [more]
PER70_MAIZE1.415e-3357.63Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02010G11SK IF1 Citrus clementina cDNA clone C02010G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289245 ID=CX289245; Name=CX289245; organism=Citrus clementina; type=EST; length=409bp
GTTATCTTCTCGCAGCAGCTCTTCTTGTTGCTTTTGTGCTTGAGGGATCA
CCATCTCAAGCTCAACTTTCTCCATCTTTTTATTCTTCCACATGCCCTAA
TGTATTGAACACTATCGAGGATGTGCTTAAGAAAGCTTTCTCGTCCGATA
TCCGGATCGGTGCCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTGTT
GATGGGTGTGATGCATCGATTTTGCTGGACAGCACTAACACCATAGACAG
CGAGAAATTTGCTGCGCCAAATAACAATTCGGCGAGGGGTTTTGAAGTTA
TTGATAACATGAAAGCTGCCGTTGAAAGGGCATGTCCAAGGGTTGTTTCC
TGCGCTGATATTCTTACTATTGCGGCTGAACGATCCGTTGCTTTGTCAGG
GGGTCCGTC
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