CX289245

Overview
NameCX289245
Unique NameCX289245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14735 contig Ccv1_Contig14735:51..459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER1_HORVU (Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.566e-30
Identity = 65/118 (55.08%), Postives = 81/118 (68.64%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            + AQLSP+FY ++CP  L TI+  +  A +SD R+GASL+RLHFHDCFV GCDAS+LL        E+ A PN  S RGF VID++K  +E  C + VSCADILT+AA  SV   GGP
Sbjct:   19 ASAQLSPTFYDTSCPRALATIKSGVMAAVTSDPRMGASLLRLHFHDCFVQGCDASVLLSG-----MEQNAIPNAGSLRGFGVIDSIKTQIEAICKQTVSCADILTVAARDSVVALGGP 131          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PERX_TOBAC (Lignin-forming anionic peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.270e-30
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S AQLS +FY +TCPNV + +  V+ +   +D R GA +IRLHFHDCFV+GCD SILLD+  T  +EK  AP N  A GF+++D++K A+E  CP VVSCADIL +A+E  V L+ GP
Sbjct:   20 SNAQLSATFYDTTCPNVTSIVRGVMDQRQRTDARAGAKIIRLHFHDCFVNGCDGSILLDTDGT-QTEK-DAPANVGAGGFDIVDDIKTALENVCPGVVSCADILALASEIGVVLAKGP 135          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 8.037e-29
Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 3
Query:   81 YSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            Y ++CP   + +   ++     D R+ ASL+RLHFHDCFV+GCDAS+LLD T  +  EK A PN NS RGFEVID++K+ +E  CP  VSCADIL +AA  SV +SGGP
Sbjct:   55 YRNSCPEAESIVYSWVETTVLEDPRMAASLLRLHFHDCFVNGCDASVLLDDTEGLVGEKTAPPNLNSLRGFEVIDSIKSDIESVCPETVSCADILAMAARDSVVVSGGP 163          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER28_ARATH (Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.037e-29
Identity = 61/116 (52.59%), Postives = 81/116 (69.83%), Query Frame = 3
Query:   60 AQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            AQL   FYS +CPN    +E+++++ F+ D  I A+L R+HFHDCFV GCDAS+L+D T +  SEK A P N S RGFE+ID +K A+E  CP  VSC+DI+T+A   +V L GGP
Sbjct:   21 AQLKFKFYSESCPNAETIVENLVRQQFARDPSITAALTRMHFHDCFVQGCDASLLIDPTTSQLSEKNAGP-NFSVRGFELIDEIKTALEAQCPSTVSCSDIVTLATRDAVFLGGGP 135          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER11_ARATH (Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.371e-28
Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 3
Query:   66 LSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            L+  +Y STCP V + I+  ++     D R  A +IRLHFHDCFV GCD S+LLD T T+  EK A+PN NS +G++++D +K  +E  CP VVSCAD+LTI A  +  L GGP
Sbjct:   30 LTLDYYKSTCPTVFDVIKKEMECIVKEDPRNAAIIIRLHFHDCFVQGCDGSVLLDETETLQGEKKASPNINSLKGYKIVDRIKNIIESECPGVVSCADLLTIGARDATILVGGP 143          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER17_ARATH (Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.791e-28
Identity = 59/114 (51.75%), Postives = 79/114 (69.30%), Query Frame = 3
Query:   66 LSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            L P FYS TCP   + +   +KKA   + R  AS++R  FHDCFV+GCDAS+LLD T  +  EK +  N +S R FEV+D++K A+E+ACP  VSCADI+ +AA  +VAL+GGP
Sbjct:   23 LRPRFYSETCPEAESIVRREMKKAMIKEARSVASVMRFQFHDCFVNGCDASLLLDDTPNMLGEKLSLSNIDSLRSFEVVDDIKEALEKACPATVSCADIVIMAARDAVALTGGP 136          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER64_ARATH (Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.339e-28
Identity = 61/114 (53.51%), Postives = 78/114 (68.42%), Query Frame = 3
Query:   66 LSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            LSP +Y  TCP   + + + +KKA S+D  + A+L+R+HFHDCFV GCD S+LLDS     +EK   P N S   F VIDN K A+E  CP +VSCADIL++AA  +VALSGGP
Sbjct:   23 LSPHYYDHTCPQADHIVTNAVKKAMSNDQTVPAALLRMHFHDCFVRGCDGSVLLDSKGKNKAEK-DGPPNISLHAFYVIDNAKKALEEQCPGIVSCADILSLAARDAVALSGGP 135          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER57_ARATH (Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.054e-28
Identity = 61/116 (52.59%), Postives = 81/116 (69.83%), Query Frame = 3
Query:   60 AQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            AQL   FYS +CP     + +++++ F     + A+L+R+HFHDCFV GCDAS+L+DSTN   SEK A P N S R F++ID +KA +E ACP  VSCADI+T+A   SVAL+GGP
Sbjct:   22 AQLRVGFYSQSCPQAETIVRNLVRQRFGVTPTVTAALLRMHFHDCFVKGCDASLLIDSTN---SEKTAGP-NGSVREFDLIDRIKAQLEAACPSTVSCADIVTLATRDSVALAGGP 133          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER42_MAIZE (Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.989e-28
Identity = 61/121 (50.41%), Postives = 83/121 (68.60%), Query Frame = 3
Query:   48 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPN-NNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S + AQLS +FY ++CP+ ++TI   +  A +   R+GASL+RLHFHDCF+ GCDASILL+ T+    E+   PN   + R F+V++++KA VE ACP VVSCADIL +AA   V   GGP
Sbjct:   25 STASAQLSSTFYDTSCPSAMSTISSGVNSAVAQQARVGASLLRLHFHDCFIQGCDASILLNDTS---GEQTQPPNLTLNPRAFDVVNSIKAQVEAACPGVVSCADILAVAARDGVVALGGP 142          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER66_MAIZE (Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.804e-28
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 3
Query:   48 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPN-NNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S + AQLS +FY  +CPN L+TI   +  A   + R+GASL+RLHFHDCFV GCDAS+LL+ T+    E+   PN   + RGF V++++KA VE  CP +VSCADIL +AA   V   GGP
Sbjct:   25 SAASAQLSSTFYDRSCPNALSTIRSGVNSAVRQEPRVGASLLRLHFHDCFVRGCDASLLLNDTS---GEQSQGPNLTLNPRGFVVVNSIKAQVESVCPGIVSCADILAVAARDGVVALGGP 142          
The following BLAST results are available for this feature:
BLAST of CX289245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER1_HORVU5.566e-3055.08Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1[more]
PERX_TOBAC7.270e-3054.24Lignin-forming anionic peroxidase OS=Nicotiana tab... [more]
PER40_ARATH8.037e-2954.13Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]
PER28_ARATH8.037e-2952.59Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=... [more]
PER11_ARATH1.371e-2850.00Peroxidase 11 OS=Arabidopsis thaliana GN=PER11 PE=... [more]
PER17_ARATH1.791e-2851.75Peroxidase 17 OS=Arabidopsis thaliana GN=PER17 PE=... [more]
PER64_ARATH2.339e-2853.51Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=... [more]
PER57_ARATH3.054e-2852.59Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=... [more]
PER42_MAIZE3.989e-2850.41Peroxidase 42 OS=Zea mays GN=PER42 PE=2 SV=1[more]
PER66_MAIZE6.804e-2851.24Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02010G11SK IF1 Citrus clementina cDNA clone C02010G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289245 ID=CX289245; Name=CX289245; organism=Citrus clementina; type=EST; length=409bp
GTTATCTTCTCGCAGCAGCTCTTCTTGTTGCTTTTGTGCTTGAGGGATCA
CCATCTCAAGCTCAACTTTCTCCATCTTTTTATTCTTCCACATGCCCTAA
TGTATTGAACACTATCGAGGATGTGCTTAAGAAAGCTTTCTCGTCCGATA
TCCGGATCGGTGCCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTGTT
GATGGGTGTGATGCATCGATTTTGCTGGACAGCACTAACACCATAGACAG
CGAGAAATTTGCTGCGCCAAATAACAATTCGGCGAGGGGTTTTGAAGTTA
TTGATAACATGAAAGCTGCCGTTGAAAGGGCATGTCCAAGGGTTGTTTCC
TGCGCTGATATTCTTACTATTGCGGCTGAACGATCCGTTGCTTTGTCAGG
GGGTCCGTC
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