CX289245

Overview
NameCX289245
Unique NameCX289245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.980e-27
Identity = 60/117 (51.28%), Postives = 78/117 (66.67%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLD-STNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSG 401
            ++AQL   FY ++CPN    +   +  AF+ D  I A LIRLHFHDCFV GCD S+LL  +     +E+ A PNN S RGF+VID  K AVE++CPR VSCADI+  AA  S++L+G
Sbjct:   31 ARAQLRVGFYDTSCPNAEALVRQAVAAAFAKDAGIAAGLIRLHFHDCFVRGCDGSVLLTVNPGGGQTERDALPNNPSLRGFDVIDAAKTAVEQSCPRTVSCADIVAFAARDSISLTG 147          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER44_ARATH (Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.410e-27
Identity = 60/116 (51.72%), Postives = 75/116 (64.66%), Query Frame = 3
Query:   60 AQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            AQL   FYS +CP   + +  V+   F SD  I A+ +R+ FHDCFV GCDAS+L+D      SEK   P N S RG+E+ID  K  +E ACPR VSCADI+T+A   SVAL+GGP
Sbjct:   20 AQLRTGFYSRSCPRAESIVASVVANRFRSDKSITAAFLRMQFHDCFVRGCDASLLIDPRPGRPSEKSTGP-NASVRGYEIIDEAKRQLEAACPRTVSCADIVTLATRDSVALAGGP 134          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER20_ARATH (Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.523e-27
Identity = 61/114 (53.51%), Postives = 75/114 (65.79%), Query Frame = 3
Query:   66 LSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            L   FY  +CP     ++  ++ A   D R+ ASL+RL FHDCFV GCDAS+LLD+   + SEK A PN NS RGFEVID +K  +E ACP  VSC+DIL +AA  SV L GGP
Sbjct:   30 LLKGFYKESCPLAEEIVKHNIEVAVLKDPRMAASLLRLQFHDCFVLGCDASVLLDTHGDMLSEKQATPNLNSLRGFEVIDYIKYLLEEACPLTVSCSDILALAARDSVFLRGGP 143          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER39_ARATH (Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.825e-27
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S+AQL   FY  TCP     ++DV+ +  ++   + A LIR+HFHDCFV GCD SIL+++T++    +  AP N + RGF+ ID +K+A+E  CP +VSCADI+T+A   S+   GGP
Sbjct:   21 SEAQLKMGFYDQTCPYAEKIVQDVVNQHINNAPSLAAGLIRMHFHDCFVRGCDGSILINATSSNQQVEKLAPPNLTVRGFDFIDKVKSALESKCPGIVSCADIITLATRDSIVAIGGP 138          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER2_ZINEL (Basic peroxidase OS=Zinnia elegans GN=POD3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.283e-26
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 3
Query:   60 AQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            AQLS +FY +TCP  L+TI   ++ + SS+ R  A +IRL FHDCFV GCDAS+LL       SE+ A+P N+   G+EVID  KAAVER CP VVSCADIL +AA  +    GGP
Sbjct:   30 AQLSTTFYDTTCPTALSTIRTSIRSSVSSNRRNAALVIRLLFHDCFVQGCDASLLLSGAG---SER-ASPANDGVLGYEVIDAAKAAVERVCPGVVSCADILAVAARDASVAVGGP 141          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER1_ZINEL (Basic peroxidase OS=Zinnia elegans GN=POD1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.283e-26
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 3
Query:   60 AQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            AQLS +FY +TCP  L+TI   ++ + SS+ R  A +IRL FHDCFV GCDAS+LL       SE+ A+P N+   G+EVID  KAAVER CP VVSCADIL +AA  +    GGP
Sbjct:   30 AQLSTTFYDTTCPTALSTIRTSIRSSVSSNRRNAALVIRLLFHDCFVQGCDASLLLSGAG---SER-ASPANDGVLGYEVIDAAKAAVERVCPGVVSCADILAVAARDASVAVGGP 141          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.283e-26
Identity = 63/118 (53.39%), Postives = 77/118 (65.25%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            +  QLS +FY ++CP  L  I+  +  A SSD R+GASL+RLHFHDCF  GCDAS+LL        E+ A PN  S RGF VIDN+K  +E  C + VSCADILT+AA  SV   GGP
Sbjct:   21 ASGQLSSTFYDTSCPRALVAIKSGVAAAVSSDPRMGASLLRLHFHDCF--GCDASVLLTGM-----EQNAGPNVGSLRGFGVIDNIKTQLESVCKQTVSCADILTVAARDSVVALGGP 131          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER60_ARATH (Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.189e-26
Identity = 62/120 (51.67%), Postives = 80/120 (66.67%), Query Frame = 3
Query:   45 GSPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGG 404
            G     QL   FYS  C NV N +  V+ +AF  D  I  ++IRL+FHDCF +GCDAS+LLD +N   SEK A+P N S RG+EVID++K+AVE+ C RVVSCADI+ +A    V L+ G
Sbjct:   21 GHGCYGQLRLGFYSQNCQNVENIVSKVVGEAFIKDSSIAPAMIRLYFHDCFSNGCDASLLLDGSN---SEKKASP-NLSVRGYEVIDDIKSAVEKECDRVVSCADIIALATRDLVTLASG 136          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER66_ARATH (Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.368e-26
Identity = 58/119 (48.74%), Postives = 77/119 (64.71%), Query Frame = 3
Query:   51 PSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            PS+A L   +Y  +CP     I + ++ A   D ++ A L+R+ FHDCF+ GCDASILLDST +  +EK   P N S R F VI++ K  +E+ACPR VSCAD++ IAA   V LSGGP
Sbjct:   21 PSEAALDAHYYDQSCPAAEKIILETVRNATLYDPKVPARLLRMFFHDCFIRGCDASILLDSTRSNQAEK-DGPPNISVRSFYVIEDAKRKLEKACPRTVSCADVIAIAARDVVTLSGGP 138          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER1_ORYSJ (Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PRX74 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.086e-25
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S AQL   FYS++CP+V   +   + +A  +   +   L+R+HFHDCFV GCD S+LLDS     +EK A P N + RGF  ++ +KAAVE+ACP  VSCAD+L + A  +V LS GP
Sbjct:   20 SSAQLDEKFYSNSCPSVEAVVRKEMVRALGAAPSLAGPLLRMHFHDCFVRGCDGSVLLDSAGNSTAEKDATP-NQTLRGFGFVERVKAAVEKACPGTVSCADVLALMARDAVWLSKGP 136          
The following BLAST results are available for this feature:
BLAST of CX289245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER1_MAIZE1.980e-2751.28Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]
PER44_ARATH4.410e-2751.72Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=... [more]
PER20_ARATH7.523e-2753.51Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=... [more]
PER39_ARATH9.825e-2745.76Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=... [more]
PER2_ZINEL1.283e-2654.31Basic peroxidase OS=Zinnia elegans GN=POD3 PE=1 SV... [more]
PER1_ZINEL1.283e-2654.31Basic peroxidase OS=Zinnia elegans GN=POD1 PE=1 SV... [more]
PER1_WHEAT1.283e-2653.39Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PER60_ARATH2.189e-2651.67Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=... [more]
PER66_ARATH6.368e-2648.74Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=... [more]
PER1_ORYSJ1.086e-2547.46Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PR... [more]

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Properties
Property NameValue
Genbank descriptionC02010G11SK IF1 Citrus clementina cDNA clone C02010G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289245 ID=CX289245; Name=CX289245; organism=Citrus clementina; type=EST; length=409bp
GTTATCTTCTCGCAGCAGCTCTTCTTGTTGCTTTTGTGCTTGAGGGATCA
CCATCTCAAGCTCAACTTTCTCCATCTTTTTATTCTTCCACATGCCCTAA
TGTATTGAACACTATCGAGGATGTGCTTAAGAAAGCTTTCTCGTCCGATA
TCCGGATCGGTGCCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTGTT
GATGGGTGTGATGCATCGATTTTGCTGGACAGCACTAACACCATAGACAG
CGAGAAATTTGCTGCGCCAAATAACAATTCGGCGAGGGGTTTTGAAGTTA
TTGATAACATGAAAGCTGCCGTTGAAAGGGCATGTCCAAGGGTTGTTTCC
TGCGCTGATATTCTTACTATTGCGGCTGAACGATCCGTTGCTTTGTCAGG
GGGTCCGTC
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