CX289245

Overview
NameCX289245
Unique NameCX289245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER71_ARATH (Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.420e-25
Identity = 57/109 (52.29%), Postives = 71/109 (65.14%), Query Frame = 3
Query:   78 FYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGG 404
            FY +TCP     + + +   FSSD RI   ++R+HFHDCFV GCD SIL+   NT   E+ A PN N  +GFEVIDN K  +E ACP VVSCADIL +AA  +V L+ G
Sbjct:   39 FYLTTCPRAETIVRNAVNAGFSSDPRIAPGILRMHFHDCFVQGCDGSILISGANT---ERTAGPNLN-LQGFEVIDNAKTQLEAACPGVVSCADILALAARDTVILTQG 143          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.420e-25
Identity = 57/121 (47.11%), Postives = 79/121 (65.29%), Query Frame = 3
Query:   48 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPN-NNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            +P    LS +FY   CP V N I   LKK F  DI + A+++R+HFHDCFV GC+AS+LL  + +   E+ + PN     + F VI+N++A V++ C +VVSC+DIL +AA  SV LSGGP
Sbjct:   38 APIVKGLSWNFYQKACPKVENIIRKELKKVFKRDIGLAAAILRIHFHDCFVQGCEASVLLAGSASGPGEQSSIPNLTLRQQAFVVINNLRALVQKKCGQVVSCSDILALAARDSVVLSGGP 158          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.161e-25
Identity = 54/119 (45.38%), Postives = 82/119 (68.91%), Query Frame = 3
Query:   51 PSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            P QAQL  +FY+++CPN    ++D +    S+   + A+LIR+HFHDCFV GCD S+L++ST+  ++E+ A P N + RGF  ID +K+ +E  CP +VSCADI+ +A+  +V  +GGP
Sbjct:   21 PIQAQLQMNFYANSCPNAEKIVQDFVSNHVSNAPSLAAALIRMHFHDCFVRGCDGSVLINSTSG-NAERDATP-NLTVRGFGFIDAIKSVLEAQCPGIVSCADIIALASRDAVVFTGGP 137          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.128e-25
Identity = 62/119 (52.10%), Postives = 76/119 (63.87%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTN-TIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRV-VSCADILTIAAERSVALSGG 404
            S   LS      +C  V + ++ V+  A  ++ R+GASLIRLHFHDCFVDGCD  ILLD  N T   E+ + PNNNS RGFEVI   K +V  +CP + VSCADIL IAA  S+A  GG
Sbjct:   67 SDKYLSQQLTQESC--VFSAVKGVVDSAIDNETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNNNSVRGFEVIAQAKQSVVDSCPNISVSCADILAIAARDSLAKLGG 183          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER13_ARATH (Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.196e-25
Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S AQL   FYS TCP+  + + DV+++A ++D    A L+RL FHDCFV+GCD SIL+      D E+FAA N   A GF+VID  K+ +ER CP VVSCADI+ +AA  ++A + GP
Sbjct:   20 SAAQLQFGFYSETCPSAESIVRDVVQQAVTNDPGKAAVLLRLQFHDCFVEGCDGSILIKHGGN-DDERFAAGNAGVA-GFDVIDEAKSELERFCPGVVSCADIVALAARDAIAEAKGP 135          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER5_VITVI (Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.201e-24
Identity = 54/113 (47.79%), Postives = 73/113 (64.60%), Query Frame = 3
Query:   66 LSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGG 404
            L   FY ++C      ++D ++K F  D  +   L+R+HFHDCFV GCD S+L+DST +  +EK +  NN S RGFEVID+ KA +E  C  VVSCADI+  AA  SV ++GG
Sbjct:   61 LQVGFYRTSCGLAEFIVKDEVRKGFIRDSGVAPGLVRMHFHDCFVRGCDGSVLIDSTPSNTAEKDSPANNPSLRGFEVIDSAKARLEAVCKGVVSCADIVAFAARDSVEITGG 173          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER47_ARATH (Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.049e-24
Identity = 57/122 (46.72%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   45 GSPSQAQ-LSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            G P  A+ LS ++Y  +CP     +++ +  A  +D  + A LIR+ FHDCF++GCDASILLDST    +EK  +P N S RG+E+ID+ K  +E  CP VVSCADI+ +AA  +V  +GGP
Sbjct:   18 GFPFHARGLSMTYYMMSCPFAEQIVKNSVNNALQADPTLAAGLIRMLFHDCFIEGCDASILLDSTKDNTAEK-DSPANLSLRGYEIIDDAKEKIENRCPGVVSCADIVAMAARDAVFWAGGP 138          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER30_ARATH (Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.564e-24
Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 3
Query:   54 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVALSGGP 407
            S+AQL  +FY+ +CPN    I D ++    +   + A LIR+HFHDCFV GCD S+L++ST+   + +  AP N + RGF  ++ +KA +E+ CP+ VSCADI+ + A  +V  +GGP
Sbjct:   25 SEAQLQMNFYAKSCPNAEKIISDHIQNHIHNGPSLAAPLIRMHFHDCFVRGCDGSVLINSTS--GNAERDAPPNLTLRGFGFVERIKALLEKVCPKTVSCADIIALTARDAVVATGGP 140          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.564e-24
Identity = 59/103 (57.28%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  102 VLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTN-TIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRV-VSCADILTIAAERSVALSGG 404
            V + +  V+  A  ++ R+GASLIRLHFHDCFVDGCD  ILLD  N T   E+ + PN NSARG+EVI   K +V   CP V VSCADIL IAA  SVA  GG
Sbjct:   82 VFSAVRAVVDSAIDAETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGG 184          
BLAST of CX289245 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.785e-24
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 3
Query:  102 VLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTN-TIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRV-VSCADILTIAAERSVALSGG 404
            V + +  V+  A  ++ R+GASLIRLHFHDCFVDGCD  ILLD  N T   E+ + PN NSARG+EVI   K +V   CP + VSCADIL IAA  SVA  GG
Sbjct:   81 VFSAVRGVVDSAIDAETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSARGYEVIAQAKQSVIDTCPNISVSCADILAIAARDSVAKLGG 183          
The following BLAST results are available for this feature:
BLAST of CX289245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER71_ARATH2.420e-2552.29Peroxidase 71 OS=Arabidopsis thaliana GN=PER71 PE=... [more]
PER12_ARATH2.420e-2547.11Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER3_ARATH3.161e-2545.38Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]
PER2_SOLLC4.128e-2552.10Suberization-associated anionic peroxidase 2 OS=So... [more]
PER13_ARATH9.196e-2550.00Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=... [more]
PER5_VITVI1.201e-2447.79Peroxidase 5 OS=Vitis vinifera GN=GSVIVT0003715900... [more]
PER47_ARATH2.049e-2446.72Peroxidase 47 OS=Arabidopsis thaliana GN=PER47 PE=... [more]
PER30_ARATH4.564e-2443.22Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=... [more]
PER1_SOLLC4.564e-2457.28Suberization-associated anionic peroxidase 1 OS=So... [more]
PERX_SOLTU7.785e-2456.31Suberization-associated anionic peroxidase OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionC02010G11SK IF1 Citrus clementina cDNA clone C02010G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289245 ID=CX289245; Name=CX289245; organism=Citrus clementina; type=EST; length=409bp
GTTATCTTCTCGCAGCAGCTCTTCTTGTTGCTTTTGTGCTTGAGGGATCA
CCATCTCAAGCTCAACTTTCTCCATCTTTTTATTCTTCCACATGCCCTAA
TGTATTGAACACTATCGAGGATGTGCTTAAGAAAGCTTTCTCGTCCGATA
TCCGGATCGGTGCCAGCCTCATCAGGCTTCATTTCCATGACTGTTTTGTT
GATGGGTGTGATGCATCGATTTTGCTGGACAGCACTAACACCATAGACAG
CGAGAAATTTGCTGCGCCAAATAACAATTCGGCGAGGGGTTTTGAAGTTA
TTGATAACATGAAAGCTGCCGTTGAAAGGGCATGTCCAAGGGTTGTTTCC
TGCGCTGATATTCTTACTATTGCGGCTGAACGATCCGTTGCTTTGTCAGG
GGGTCCGTC
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