CX289246

Overview
NameCX289246
Unique NameCX289246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA_BOVIN (UTP--glucose-1-phosphate uridylyltransferase OS=Bos taurus GN=UGP2 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.495e-19
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 265
            G +T +E R+ P  P ++LG  F KV ++L RF+SIP ++ELD L V+GDV FG N++LKG V I A  G++++IP GAVLENK ++G
Sbjct:  414 GSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIANHGDRIDIPPGAVLENKIVSG 501          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA1_DICDI (UTP--glucose-1-phosphate uridylyltransferase 1 OS=Dictyostelium discoideum GN=uppA PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.495e-19
Identity = 46/88 (52.27%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 265
            G V  N  R+    P ++LG EF  V ++  RFKSIP ++ELD L V+GDV+FG+ ITLKG V I A  GE+++IPDG VLENK ++G
Sbjct:  417 GQVKLNSKREGQDVPLVKLGEEFSTVSDYEKRFKSIPDLLELDHLTVSGDVYFGSRITLKGTVIIVANHGERVDIPDGVVLENKVLSG 504          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA_PIG (UTP--glucose-1-phosphate uridylyltransferase OS=Sus scrofa GN=UGP2 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 5.682e-19
Identity = 44/88 (50.00%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 265
            G +T +E R+ P  P ++LG  F KV ++L RF+SIP ++ELD L V+GDV FG N++LKG V I    G++++IP GAVLENK ++G
Sbjct:  414 GSLTMSEKREFPTVPLVKLGSSFTKVQDYLRRFESIPDMLELDHLTVSGDVTFGKNVSLKGTVIIIXNHGDRIDIPPGAVLENKIVSG 501          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA2_DICDI (UTP--glucose-1-phosphate uridylyltransferase 2 OS=Dictyostelium discoideum GN=ugpB PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 265
            G +  N+ R     P ++LG  FKKV ++ +R K IP I+ELD L V+GD+ FG N+ LKG V I A  G +++IP+G+  ENK ++G
Sbjct:  408 GVLVMNKNRPFTTVPLVKLGDNFKKVSDYQARIKGIPDILELDQLTVSGDITFGPNMVLKGTVIIVANHGSRIDIPEGSEFENKVVSG 495          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA1_SCHPO (Probable UTP--glucose-1-phosphate uridylyltransferase OS=Schizosaccharomyces pombe GN=SPCC1322.04 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.679e-16
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 2
Query:    2 GFVTRNEARKNPANPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 265
            G V  N  R     P ++LG  FKKV +F +   SIP I+ELD L +TGDV  G N+TLKG V I A    +++IP+G+VLEN  I G
Sbjct:  412 GQVEMNPRRFGGTAPLVKLGAHFKKVADFSAHIPSIPKILELDHLTITGDVNIGRNVTLKGTVIIVASDANRIDIPNGSVLENCVITG 499          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA1_YEAST (UTP--glucose-1-phosphate uridylyltransferase OS=Saccharomyces cerevisiae GN=UGP1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 2
Query:   41 NPTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 265
            NP I+LG  FKKV  F +R   IP I+ELD L +TG+V+ G ++TL+G V I    G K++IP+G++LEN  + G
Sbjct:  418 NPLIKLGSHFKKVSGFNARIPHIPKIVELDHLTITGNVFLGKDVTLRGTVIIVCSDGHKIDIPNGSILENVVVTG 492          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA1_ENCCU (UTP--glucose-1-phosphate uridylyltransferase OS=Encephalitozoon cuniculi GN=UGP1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.339e-11
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 2
Query:   44 PTIEL-GPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEING 265
            PT++L G  F K+  +   FK IP I+EL+ L V+G+V FG N+ LKG V I A    K+ +PDG+VLE+  I G
Sbjct:  411 PTVKLIGENFSKIEKYEKCFKGIPDILELEVLTVSGNVLFGKNVVLKGTVIILADEKSKICVPDGSVLEDNIIYG 485          
BLAST of CX289246 vs. ExPASy Swiss-Prot
Match: UGPA2_YEAST (Probable UTP--glucose-1-phosphate uridylyltransferase OS=Saccharomyces cerevisiae GN=YHL012W PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 33/72 (45.83%), Postives = 45/72 (62.50%), Query Frame = 2
Query:   44 PTIELGPEFKKVGNFLSRFKSIPSIIELDSLKVTGDVWFGANITLKGKVTIAAKSGEKLEIPDGAVLENKEI 259
            P+I+LG EF     F      IP+I+EL+ L V G+V+FG NITLKG V I     + + +PDG++LEN  I
Sbjct:  410 PSIDLGDEFATYETFKIGVPDIPNILELEHLTVMGNVFFGRNITLKGTVIIICDENDVITVPDGSILENVTI 481          
The following BLAST results are available for this feature:
BLAST of CX289246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
UGPA_BOVIN1.495e-1951.14UTP--glucose-1-phosphate uridylyltransferase OS=Bo... [more]
UGPA1_DICDI1.495e-1952.27UTP--glucose-1-phosphate uridylyltransferase 1 OS=... [more]
UGPA_PIG5.682e-1950.00UTP--glucose-1-phosphate uridylyltransferase OS=Su... [more]
UGPA2_DICDI1.547e-1644.32UTP--glucose-1-phosphate uridylyltransferase 2 OS=... [more]
UGPA1_SCHPO7.679e-1647.73Probable UTP--glucose-1-phosphate uridylyltransfer... [more]
UGPA1_YEAST2.918e-1548.00UTP--glucose-1-phosphate uridylyltransferase OS=Sa... [more]
UGPA1_ENCCU3.339e-1146.67UTP--glucose-1-phosphate uridylyltransferase OS=En... [more]
UGPA2_YEAST4.360e-1145.83Probable UTP--glucose-1-phosphate uridylyltransfer... [more]

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Properties
Property NameValue
Genbank descriptionC02010G12SK IF1 Citrus clementina cDNA clone C02010G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289246 ID=CX289246; Name=CX289246; organism=Citrus clementina; type=EST; length=419bp
TGGATTTGTTACTCGGAATGAAGCTAGAAAAAACCCTGCAAATCCAACTA
TTGAACTGGGACCTGAATTTAAGAAGGTTGGCAACTTTTTGAGCCGATTC
AAGTCTATTCCTAGTATCATCGAGCTTGATAGCCTTAAGGTGACCGGTGA
CGTATGGTTTGGTGCTAATATTACCCTCAAGGGGAAAGTGACTATTGCTG
CCAAATCTGGGGAGAAACTGGAAATTCCTGATGGAGCTGTACTTGAAAAC
AAGGAGATCAATGGCCCCGGGGATCTGTAAGGAACATGCTGTAGATTACT
TGTCGAAGAGGTCTGCTCAGTGCTTATCTTGAACCTTGAGGATCGGAGTC
TTGTTTTGCTGGATGTTGGATTTCATTCCAAATTTTATTTTGTATTAATT
TTTTATTTCATCGATCTCT
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