CX289249

Overview
NameCX289249
Unique NameCX289249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289249 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.442e-15
Identity = 46/129 (35.66%), Postives = 63/129 (48.84%), Query Frame = 3 
Query:   15 PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILEN 401
            P S Y  TK  GE++ H Y   +G+ +  LRFFTVYGP  RPDMA+    K  LQ K + ++    D + +RDFTYI D VKG    L                      N+G      V ++VS++E+
Sbjct:  145 PLSPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGPRQRPDMAFHRLIKQHLQQKPLTIF---GDGQQSRDFTYISDCVKGITAVLGKPHLIG------------ETVNIGGAERASVLKVVSLIED 258
The following BLAST results are available for this feature:
BLAST of CX289249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YTCB_BACSU6.442e-1535.66Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC02010H03SK IF1 Citrus clementina cDNA clone C02010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289249 ID=CX289249; Name=CX289249; organism=Citrus clementina; type=EST; length=401bp
ACAGAACCGACCAGCCCGCGAGTTTGTACGCGGCGACTAAGAAAGCCGGG
GAGGAAATCGCCCACACTTACAACCATATTTACGGTCTTGCCCTCACGGG
CCTAAGGTTCTTCACCGTGTACGGCCCCTGGGGGAGACCCGACATGGCTT
ACTTCTTCTTCACCAAAGATATCTTACAGGGCAAAACCATTGACGTGTAC
AAGACGCAAGATGACAGGGAGGTGGCGCGTGACTTCACATACATAGATGA
CGTAGTGAAGGGCTGTGTCGGGGCGTTGGACACGGCGGGGAAGAGCACGG
GGAGCAGGGGGAAGAAGCGGGGCCCCGCTCAGCTGAGAGTTTACAATCTC
GGAAACACGTCGCCAGTGCCCGTGGGGAGATTGGTGTCGATATTGGAGAA
T
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