CX289251

Overview
NameCX289251
Unique NameCX289251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL2_CAEEL (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.660e-23
Identity = 47/111 (42.34%), Postives = 75/111 (67.57%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 337
            G + +R  W++YF++T  LI+VVDS+DR+R+++  +EL ++L E+ L  A LLV ANK DLP A++   I   L LHS++  HW I S CA SG+ L + + WL +++ ++
Sbjct:   69 GQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGASLLVLANKSDLPGAIDVNSIAQVLDLHSIKSHHWKIFSCCALSGDRLVQAMTWLCDDVGSR 179          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL5_DICDI (ADP-ribosylation factor-like protein 5 OS=Dictyostelium discoideum GN=arl5 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.405e-22
Identity = 47/108 (43.52%), Postives = 74/108 (68.52%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 328
            G   +R  W  Y+ NTQ +I V+DS DR RV   ++EL +ML  + L+ +++L++ANKQDL +AM+  E++  L LHS++   ++IQ+ CA +G+GL  GLDWL ++I
Sbjct:   73 GQDLLRSTWNQYYINTQAVILVIDSTDRARVNLIKEELFKMLAHENLKKSIILIYANKQDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLDWLVSHI 180          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL2_CAEBR (ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.405e-22
Identity = 47/111 (42.34%), Postives = 73/111 (65.77%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 337
            G + +R  W++YF++T  LI+VVDS+DR+R+ +  +EL ++L E+ L  A LLV ANK DLP A++   I   L L S++  HW I S CA SGE L + + WL +++ ++
Sbjct:   69 GQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGASLLVLANKSDLPGAIDVNSIAQVLELQSIKTHHWKIFSCCALSGERLVQAMTWLCDDVGSR 179          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL5_CAEEL (ADP-ribosylation factor-like protein 5 OS=Caenorhabditis elegans GN=arl-5 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 1.835e-22
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-QRHWYIQSTCATSGEGLYEGLDWLSNNI 328
            G   +R  W  Y+  T  +I V+DS+D  R+   +++LH ML  ++L  A +LV ANKQDLP AMN AE++ +LGL +LR  R W I   CA  GEGL E L+W++NN+
Sbjct:   70 GQESLRKSWSTYYVQTDVVIVVIDSSDTTRIPIMKEQLHNMLQHEDLARAHILVLANKQDLPGAMNPAEVSTQLGLQTLRGARKWQINGCCAVKGEGLPEALEWIANNL 178          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARFF_DICDI (ADP-ribosylation factor F OS=Dictyostelium discoideum GN=arrF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.835e-22
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML--NEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 337
            G   IR LWR Y Q T   IFVVDS DR+R  E + E+  ++  N++E  +A LL+FANKQD+ N +  AE+ + L L+SL  + W++Q   A  G+G+YEG DW+ +N + K
Sbjct:   78 GQNNIRALWRQYDQRTDVFIFVVDSTDRERFDEVKQEIKNIIEQNKNESSNASLLIFANKQDMLNPITPAELVNSLDLNSLTNKKWHVQPCSAVRGDGIYEGFDWIVSNSSGK 190          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL5C_MOUSE (ADP-ribosylation factor-like protein 5C OS=Mus musculus GN=Arl5c PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.904e-21
Identity = 44/104 (42.31%), Postives = 70/104 (67.31%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 316
            G   +R  W  Y+ N + +I V+DS DR+R++  R+EL++ML  + L++A +L+FANKQD+ ++M  AEI+  L L +++   W+IQ  CA +GEGL  GL W+
Sbjct:   69 GQEALRSTWDTYYSNAEFVILVIDSTDRNRLLTTREELYKMLAHEALQNASVLIFANKQDVKDSMTTAEISQFLTLSAIKDHPWHIQGCCALTGEGLPAGLQWM 172          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARF5_ARATH (Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.904e-21
Identity = 50/112 (44.64%), Postives = 71/112 (63.39%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 337
            G + IR  WR+YF+ T GL++VVDS+D  R+ + + EL  +L E+ L  + LL+ ANKQD+  A+   EI   L L S+ + RHW I    A +GEGL EG DWL  +IA++
Sbjct:   69 GQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL2_DROME (ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.007e-20
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 337
            G + +R  WR+YF++T GL++VVDS DR R+     EL  +L E+ L  A LLV  NKQDLP A+++ EI + L L  +   HW +    A +GE L   +DWL  +IA +
Sbjct:   69 GQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGATLLVLCNKQDLPGALSSNEIKEILHLEDITTHHWLVAGVSAVTGEKLLSSMDWLIADIAKR 179          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL2_DICDI (ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.243e-20
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*VI 349
            G + +R  WR+Y++    +I+V+DS+D  R+ + + EL ++L E++   A  LVFANKQDL  AM + EI+  L L  L   HW I S  A +G GL EG+DW+  +I ++  V+
Sbjct:   69 GQKTLRSYWRNYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEISKYLDLEQLNTHHWEIMSCSAVTGLGLEEGIDWVVKDIVSRCFVL 183          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 97.4413 bits (241), Expect = 2.930e-20
Identity = 43/102 (42.16%), Postives = 68/102 (66.67%), Query Frame = 2
Query:   26 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 331
            +W  Y+ NT+ +I V+DS DRDR++  R+EL++ML  + L+DA +L+FANKQD+ ++M   EI+  L L +++   W+IQ  CA + EGL   L W+ +  A
Sbjct:   76 IWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISHFLTLSTIKDHSWHIQGCCALTREGLPARLQWMESQAA 177          
The following BLAST results are available for this feature:
BLAST of CX289251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
ARL2_CAEEL1.660e-2342.34ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL5_DICDI1.405e-2243.52ADP-ribosylation factor-like protein 5 OS=Dictyost... [more]
ARL2_CAEBR1.405e-2242.34ADP-ribosylation factor-like protein 2 OS=Caenorha... [more]
ARL5_CAEEL1.835e-2245.87ADP-ribosylation factor-like protein 5 OS=Caenorha... [more]
ARFF_DICDI1.835e-2244.25ADP-ribosylation factor F OS=Dictyostelium discoid... [more]
ARL5C_MOUSE5.904e-2142.31ADP-ribosylation factor-like protein 5C OS=Mus mus... [more]
ARF5_ARATH5.904e-2144.64Probable ADP-ribosylation factor At2g18390 OS=Arab... [more]
ARL2_DROME1.007e-2042.34ADP-ribosylation factor-like protein 2 OS=Drosophi... [more]
ARL2_DICDI2.243e-2040.00ADP-ribosylation factor-like protein 2 OS=Dictyost... [more]
ARL5C_HUMAN2.930e-2042.16Putative ADP-ribosylation factor-like protein 5C O... [more]

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Properties
Property NameValue
Genbank descriptionC02010H05SK IF1 Citrus clementina cDNA clone C02010H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289251 ID=CX289251; Name=CX289251; organism=Citrus clementina; type=EST; length=459bp
ATTCGGCACGAGGAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACA
CTCAAGGGCTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTT
GAAGCTAGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGA
TGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAAATGCCATGA
ATGCTGCAGAGATCACTGATAAGCTTGGTCTTCACTCACTTCGTCAACGC
CACTGGTACATCCAGAGCACATGTGCAACATCTGGGGAAGGACTCTATGA
GGGTCTGGACTGGCTCTCCAACAACATCGCTAACAAGGCTTAAGTGATTG
GTCAAGTCTGAGCGACTCTTTGCGGCAGCATCTATGTGAATGATGTTACT
ATGCTTTTGTTTATTTTGTCGGGGATTCTTTTTGGGCTTTACTACCTACG
TTCAGTAGA
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