CX289251

Overview
NameCX289251
Unique NameCX289251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL4C_MOUSE (ADP-ribosylation factor-like protein 4C OS=Mus musculus GN=Arl4c PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 337
            G  K+RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L     +++Q  CA  GEGL EG+D L   I  +
Sbjct:   71 GQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKR 182          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL4C_HUMAN (ADP-ribosylation factor-like protein 4C OS=Homo sapiens GN=ARL4C PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 337
            G  K+RPLW+ Y + T G+I+VVDS D DR+ EA+ ELH++    E +   LLV ANKQDLP ++  AEI  +L LH L     +++Q  CA  GEGL EG+D L   I  +
Sbjct:   71 GQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGTPLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMILKR 182          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL6_PONAB (ADP-ribosylation factor-like protein 6 OS=Pongo abelii GN=ARL6 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.899e-19
Identity = 45/110 (40.91%), Postives = 73/110 (66.36%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 328
            G  + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   72 GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL6_HUMAN (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.899e-19
Identity = 45/110 (40.91%), Postives = 73/110 (66.36%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 328
            G  + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L +++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   72 GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL6_MOUSE (ADP-ribosylation factor-like protein 6 OS=Mus musculus GN=Arl6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.239e-19
Identity = 44/110 (40.00%), Postives = 74/110 (67.27%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 328
            G  + R LW HY+++ Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L FANK DL +++ + +++  L L S++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   72 GQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDSVTSVKVSQLLCLESIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL6_BOVIN (ADP-ribosylation factor-like protein 6 OS=Bos taurus GN=ARL6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.239e-19
Identity = 44/110 (40.00%), Postives = 72/110 (65.45%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 328
            G  + R LW HY++  Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L  ++ + W+I ++ A  GEGL EG+DWL + I
Sbjct:   72 GQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFANKMDLRDALTSVKVSQLLCLEDIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL4A_RAT (ADP-ribosylation factor-like protein 4A OS=Rattus norvegicus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.217e-19
Identity = 48/118 (40.68%), Postives = 74/118 (62.71%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*VIGQ 355
            G  K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +  ++ Q
Sbjct:   78 GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQ 195          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL4A_MOUSE (ADP-ribosylation factor-like protein 4A OS=Mus musculus GN=Arl4a PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.217e-19
Identity = 48/118 (40.68%), Postives = 74/118 (62.71%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*VIGQ 355
            G  K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +  ++ Q
Sbjct:   78 GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQ 195          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL4A_HUMAN (ADP-ribosylation factor-like protein 4A OS=Homo sapiens GN=ARL4A PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 7.217e-19
Identity = 48/118 (40.68%), Postives = 74/118 (62.71%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*VIGQ 355
            G  K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +  ++ Q
Sbjct:   78 GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQ 195          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL4A_BOVIN (ADP-ribosylation factor-like protein 4A OS=Bos taurus GN=ARL4A PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 7.217e-19
Identity = 48/118 (40.68%), Postives = 74/118 (62.71%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA*VIGQ 355
            G  K+RPLW+ Y + T G++FVVDS D +R+ EA+ ELH++    E +   +L+ ANKQDL N+++ +EI   L +  L     W++Q TCA  G+GL EGL+ L + I  +  ++ Q
Sbjct:   78 GQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQ 195          
The following BLAST results are available for this feature:
BLAST of CX289251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
ARL4C_MOUSE3.827e-2046.43ADP-ribosylation factor-like protein 4C OS=Mus mus... [more]
ARL4C_HUMAN3.827e-2046.43ADP-ribosylation factor-like protein 4C OS=Homo sa... [more]
ARL6_PONAB1.899e-1940.91ADP-ribosylation factor-like protein 6 OS=Pongo ab... [more]
ARL6_HUMAN1.899e-1940.91ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]
ARL6_MOUSE3.239e-1940.00ADP-ribosylation factor-like protein 6 OS=Mus musc... [more]
ARL6_BOVIN3.239e-1940.00ADP-ribosylation factor-like protein 6 OS=Bos taur... [more]
ARL4A_RAT7.217e-1940.68ADP-ribosylation factor-like protein 4A OS=Rattus ... [more]
ARL4A_MOUSE7.217e-1940.68ADP-ribosylation factor-like protein 4A OS=Mus mus... [more]
ARL4A_HUMAN7.217e-1940.68ADP-ribosylation factor-like protein 4A OS=Homo sa... [more]
ARL4A_BOVIN7.217e-1940.68ADP-ribosylation factor-like protein 4A OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionC02010H05SK IF1 Citrus clementina cDNA clone C02010H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289251 ID=CX289251; Name=CX289251; organism=Citrus clementina; type=EST; length=459bp
ATTCGGCACGAGGAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACA
CTCAAGGGCTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTT
GAAGCTAGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGA
TGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAAATGCCATGA
ATGCTGCAGAGATCACTGATAAGCTTGGTCTTCACTCACTTCGTCAACGC
CACTGGTACATCCAGAGCACATGTGCAACATCTGGGGAAGGACTCTATGA
GGGTCTGGACTGGCTCTCCAACAACATCGCTAACAAGGCTTAAGTGATTG
GTCAAGTCTGAGCGACTCTTTGCGGCAGCATCTATGTGAATGATGTTACT
ATGCTTTTGTTTATTTTGTCGGGGATTCTTTTTGGGCTTTACTACCTACG
TTCAGTAGA
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