CX289251

Overview
NameCX289251
Unique NameCX289251
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL8B_BOVIN (ADP-ribosylation factor-like protein 8B OS=Bos taurus GN=ARL8B PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.009e-12
Identity = 28/104 (26.92%), Postives = 61/104 (58.65%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 316
            G  + + +W  Y +    +++++D+ DR+++  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   74 GQPRFQSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 39/118 (33.05%), Postives = 64/118 (54.24%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH---WYIQSTCATSGEG------LYEGLDWLSNNIA 331
            G ++IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  +L    +    +LV ANKQD   A+  A++ + L L  L   H     I+   A  G G      + +GL WL + IA
Sbjct:   74 GGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAVLGYGKKIDKSIKKGLYWLLHIIA 191          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL11_RAT (ADP-ribosylation factor-like protein 11 OS=Rattus norvegicus GN=Arl11 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 33/99 (33.33%), Postives = 55/99 (55.56%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE 301
            G  ++R  W+ Y +    L++V+DS D  R+ EA  EL  +L +  +     LV ANKQ+ P+A+   EI ++L L   +   W +++  A +G+GL E
Sbjct:   64 GQTQLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELEEVLEDPNMAGVPFLVLANKQEAPDALPLLEIRNRLDLERFQDHCWELRACSALTGQGLQE 162          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 40/115 (34.78%), Postives = 56/115 (48.70%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLSNNI 328
            G  + R LW+ YF    G++F+VD+ D +R  EAR EL  + N  EL+D   ++  NK D PNA++ AE+   LGL +         QR   +         G  E   WLS  I
Sbjct:   76 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 41/115 (35.65%), Postives = 55/115 (47.83%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR-------QRHWYIQSTCATSGEGLYEGLDWLSNNI 328
            G  + R LW+ YF    G++F+VDS D DR  EAR EL  + N  EL+D   ++  NK D  NA++ AE+   LGL +         QR   +         G  E   WLS  I
Sbjct:   75 GHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 189          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL8B_PONAB (ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 28/104 (26.92%), Postives = 60/104 (57.69%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 316
            G  + R +W  Y +    +++++D+  R+++  +R+ELH +L++ +L+   +LV  NK+DLPNA++  ++ +K+ L +++ R     S      + +   L WL
Sbjct:   74 GQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 28/104 (26.92%), Postives = 60/104 (57.69%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 316
            G  + R +W  Y +    ++++VD+ D++++  +++ELH +L++ +L+   +LV  NK+DLP A++  E+ +K+ L +++ R     S      + +   L WL
Sbjct:   74 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 28/104 (26.92%), Postives = 60/104 (57.69%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 316
            G  + R +W  Y +    ++++VD+ D++++  +++ELH +L++ +L+   +LV  NK+DLP A++  E+ +K+ L +++ R     S      + +   L WL
Sbjct:   74 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 177          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 328
            G ++ R +WR YF +  G++F+VD+ D +R  EA+ EL  +L+ +EL     ++  NK D P+A++  E+  +LGL+            +R    ++ S     G G  +G+ WLSN +
Sbjct:   73 GHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVSEDELRHQLGLYQTTGKGRVQLEGIRPIELFMCSVVMRQGYG--DGIRWLSNYV 189          
BLAST of CX289251 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 38/119 (31.93%), Postives = 59/119 (49.58%), Query Frame = 2
Query:    5 GTRKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 328
            G ++ R LW+ YF    G++F+VD+ D +R  EAR EL  +L+ +EL     L+  NK D P A++  E+   +GL+            +R    ++ S     G G  EG  W+S  I
Sbjct:   73 GHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQTTGKGKVPLKDIRPIEIFMCSVVMRQGYG--EGFRWISQYI 189          
The following BLAST results are available for this feature:
BLAST of CX289251 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
ARL8B_BOVIN5.009e-1226.92ADP-ribosylation factor-like protein 8B OS=Bos tau... [more]
AR13B_MOUSE8.545e-1233.05ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
ARL11_RAT1.116e-1133.33ADP-ribosylation factor-like protein 11 OS=Rattus ... [more]
SAR1_YEAST1.904e-1134.78Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_CANGA1.904e-1135.65Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
ARL8B_PONAB1.904e-1126.92ADP-ribosylation factor-like protein 8B OS=Pongo a... [more]
ARL8A_HUMAN1.904e-1126.92ADP-ribosylation factor-like protein 8A OS=Homo sa... [more]
ARL8A_CHICK1.904e-1126.92ADP-ribosylation factor-like protein 8A OS=Gallus ... [more]
SAR1_TRIRE2.486e-1131.09Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]
SAR1_USTMA3.247e-1131.93Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]

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Properties
Property NameValue
Genbank descriptionC02010H05SK IF1 Citrus clementina cDNA clone C02010H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289251 ID=CX289251; Name=CX289251; organism=Citrus clementina; type=EST; length=459bp
ATTCGGCACGAGGAAGATTCGTCCTTTGTGGAGACATTACTTCCAAAACA
CTCAAGGGCTTATCTTTGTGGTTGATAGCAATGATCGTGACCGTGTGGTT
GAAGCTAGAGATGAACTGCACCGGATGCTGAATGAGGATGAGTTGAGGGA
TGCTGTGCTGCTTGTTTTTGCCAACAAGCAAGATCTTCCAAATGCCATGA
ATGCTGCAGAGATCACTGATAAGCTTGGTCTTCACTCACTTCGTCAACGC
CACTGGTACATCCAGAGCACATGTGCAACATCTGGGGAAGGACTCTATGA
GGGTCTGGACTGGCTCTCCAACAACATCGCTAACAAGGCTTAAGTGATTG
GTCAAGTCTGAGCGACTCTTTGCGGCAGCATCTATGTGAATGATGTTACT
ATGCTTTTGTTTATTTTGTCGGGGATTCTTTTTGGGCTTTACTACCTACG
TTCAGTAGA
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