CX289260

Overview
NameCX289260
Unique NameCX289260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length253
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 7.603e-24
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM A PLEE L  AI+ G+I PRDD KAR++IL+++FGWD   A+KIW FGP+T G N++VD  K VQYLN+I
Sbjct:  582 NKHNRLYMVAEPLEEDLCLAIEAGKITPRDDFKARARILADDFGWDVTDARKIWAFGPDTNGANLLVDQTKAVQYLNEI 660          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_RAT (Elongation factor 2 OS=Rattus norvegicus GN=Eef2 PE=1 SV=4)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM+ARP  +GLAE ID G +  R + KAR++ L+E++ WD   A+KIWCFGP+ TGPN++ D+ KGVQYLN+I
Sbjct:  597 NKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEI 675          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_MOUSE (Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM+ARP  +GLAE ID G +  R + KAR++ L+E++ WD   A+KIWCFGP+ TGPN++ D+ KGVQYLN+I
Sbjct:  597 NKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEI 675          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_MESAU (Elongation factor 2 OS=Mesocricetus auratus GN=EEF2 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM+ARP  +GLAE ID G +  R + KAR++ L+E++ WD   A+KIWCFGP+ TGPN++ D+ KGVQYLN+I
Sbjct:  597 NKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEI 675          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_CRIGR (Elongation factor 2 OS=Cricetulus griseus GN=EEF2 PE=3 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 1.297e-23
Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM+ARP  +GLAE ID G +  R + KAR++ L+E++ WD   A+KIWCFGP+ TGPN++ D+ KGVQYLN+I
Sbjct:  597 NKHNRLYMKARPFPDGLAEDIDKGEVSARQELKARARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEI 675          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_SCHPO (Elongation factor 2 OS=Schizosaccharomyces pombe GN=eft1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.212e-23
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR++M A P+ E L+ AI+ G + PRDD K R++I+++EFGWD   A+KIWCFGP+TTG N+VVD  K V YLN+I
Sbjct:  581 NKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEI 659          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_CHICK (Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.773e-23
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM+ARP  +GLAE ID G +  R + K R++ L+E++ WD   A+KIWCFGP+ TGPN++ D+ KGVQYLN+I
Sbjct:  597 NKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVTEARKIWCFGPDGTGPNILTDITKGVQYLNEI 675          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_PONAB (Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM+ARP  +GLAE ID G +  R + K R++ L+E++ WD   A+KIWCFGP+ TGPN++ D+ KGVQYLN+I
Sbjct:  597 NKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEI 675          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_HUMAN (Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 SV=4)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM+ARP  +GLAE ID G +  R + K R++ L+E++ WD   A+KIWCFGP+ TGPN++ D+ KGVQYLN+I
Sbjct:  597 NKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEI 675          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_CALJA (Elongation factor 2 OS=Callithrix jacchus GN=EEF2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM+ARP  +GLAE ID G +  R + K R++ L+E++ WD   A+KIWCFGP+ TGPN++ D+ KGVQYLN+I
Sbjct:  597 NKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEI 675          
The following BLAST results are available for this feature:
BLAST of CX289260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF2_NEUCR7.603e-2463.29Elongation factor 2 OS=Neurospora crassa GN=cot-3 ... [more]
EF2_RAT1.297e-2359.49Elongation factor 2 OS=Rattus norvegicus GN=Eef2 P... [more]
EF2_MOUSE1.297e-2359.49Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 S... [more]
EF2_MESAU1.297e-2359.49Elongation factor 2 OS=Mesocricetus auratus GN=EEF... [more]
EF2_CRIGR1.297e-2359.49Elongation factor 2 OS=Cricetulus griseus GN=EEF2 ... [more]
EF2_SCHPO2.212e-2358.23Elongation factor 2 OS=Schizosaccharomyces pombe G... [more]
EF2_CHICK3.773e-2358.23Elongation factor 2 OS=Gallus gallus GN=EEF2 PE=1 ... [more]
EF2_PONAB4.928e-2358.23Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 S... [more]
EF2_HUMAN4.928e-2358.23Elongation factor 2 OS=Homo sapiens GN=EEF2 PE=1 S... [more]
EF2_CALJA4.928e-2358.23Elongation factor 2 OS=Callithrix jacchus GN=EEF2 ... [more]

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Properties
Property NameValue
Genbank descriptionC02011A03SK IF1 Citrus clementina cDNA clone C02011A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289260 ID=CX289260; Name=CX289260; organism=Citrus clementina; type=EST; length=253bp
GATGAGTAAGTCTCCAACAAGCATAATCGTCTCTACATGGAAGCCCGACC
TCTGGAAGAAGGTCTTGCTGAGGCCATAGATGATGGCCGCATTGGTCCAA
GGGATGATCCCAAGGCTCGATCTAAGATCTTGTCTGAGGAGTTCGGCTGG
GACAAGGATCTTGCGAAGAAGATTTGGTGTTTTGGTCCTGAGACCACTGG
CCCTAACATGGTCGTTGATATGTGTAAGGGAGTTCAATACTTGAATGACA
TTA
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