CX289260

Overview
NameCX289260
Unique NameCX289260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length253
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_BOVIN (Elongation factor 2 OS=Bos taurus GN=EEF2 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLYM+ARP  +GLAE ID G +  R + K R++ L+E++ WD   A+KIWCFGP+ TGPN++ D+ KGVQYLN+I
Sbjct:  597 NKHNRLYMKARPFPDGLAEDIDKGEVSARQELKQRARYLAEKYEWDVAEARKIWCFGPDGTGPNILTDITKGVQYLNEI 675          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_YEAST (Elongation factor 2 OS=Saccharomyces cerevisiae GN=EFT1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.436e-23
Identity = 43/79 (54.43%), Postives = 65/79 (82.28%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR+Y++A P++E ++ AI++G I PRDD KAR++I+++++GWD   A+KIWCFGP+  GPN+V+D  K VQYL++I
Sbjct:  581 NKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEI 659          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_PICGU (Elongation factor 2 OS=Pichia guilliermondii GN=EFT2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.434e-22
Identity = 45/79 (56.96%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR+Y++A+P++E ++  I++G I PRDD KAR++IL+++ GWD   A+KIWCFGP+  GPN+VVD  K VQYLN+I
Sbjct:  581 NKHNRIYVKAQPIDEEVSLDIENGIINPRDDFKARARILADKHGWDVAEARKIWCFGPDGNGPNLVVDQTKAVQYLNEI 659          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_ENTHI (Elongation factor 2 OS=Entamoeba histolytica GN=EF-2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.873e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   13 SNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            +N  NRL+M A P  EGLAE I+ G I P  D K R+K LSE++GWD D A+KIWCFGP+  GPN+ VD+ KG+QYLN++
Sbjct:  578 ANNQNRLFMRAFPFPEGLAEDIEAGEIKPDTDFKERAKFLSEKYGWDVDEARKIWCFGPDNCGPNLFVDVTKGIQYLNEV 657          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_CANAL (Elongation factor 2 OS=Candida albicans GN=EFT2 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.446e-22
Identity = 45/79 (56.96%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR+Y++A+P++E ++  I++G I PRDD KAR++IL+++ GWD   A+KIWCFGP+  GPN+VVD  K VQYLN+I
Sbjct:  581 NKHNRIYVKAQPIDEEVSLDIENGVINPRDDFKARARILADKHGWDVVDARKIWCFGPDGNGPNLVVDQTKAVQYLNEI 659          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_DEBHA (Elongation factor 2 OS=Debaryomyces hansenii GN=EFT1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.194e-22
Identity = 45/79 (56.96%), Postives = 62/79 (78.48%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNR+Y++A+P++E ++  I+ G I PRDD KAR++IL++  GWD   A+KIWCFGP+  GPN+VVD  K VQYLN+I
Sbjct:  581 NKHNRIYVKAQPIDEEVSLDIEKGVINPRDDFKARARILADNHGWDVTDARKIWCFGPDGNGPNLVVDQTKAVQYLNEI 659          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 9.293e-22
Identity = 44/79 (55.70%), Postives = 64/79 (81.01%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRL+  A+P+ +GLA+ I+ G +  RD+ KAR+KIL+E++ +D   A+KIWCFGP+ TGPN+++D+ KGVQYLN+I
Sbjct:  591 NKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEARKIWCFGPDGTGPNLLMDVTKGVQYLNEI 669          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 98.2117 bits (243), Expect = 1.342e-20
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRL M+A P+ +GL E ID+G +  +D+ KAR++ LSE++ +D   A+KIWCFGP+ TGPN ++D  K VQYLN+I
Sbjct:  583 NKHNRLLMKALPMPDGLPEDIDNGDVSAKDEFKARARYLSEKYDYDVTEARKIWCFGPDGTGPNFILDCTKSVQYLNEI 661          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_DICDI (Elongation factor 2 OS=Dictyostelium discoideum GN=efbA PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.094e-17
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGR-IGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRL+M+A P+   L + I+ G  I  +DDPKAR+  L++   WDK+ A  IW FGPE  G N++V++ KGVQYLN+I
Sbjct:  579 NKHNRLFMKASPISMELQDLIEAGSDISSKDDPKARANYLADNHEWDKNDAMNIWSFGPEGNGANLLVNVTKGVQYLNEI 658          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_BLAHO (Elongation factor 2 OS=Blastocystis hominis PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.892e-17
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLY+   P+ +GLA+ I+D ++ P  + K R++ +S  +G D +L +KIW FGP   GPN+  +   GVQYLN+I
Sbjct:  605 NKHNRLYVNVEPMPDGLAQEIEDQKVTPEQEFKERARYMSTTYGMDVELMRKIWAFGPNGNGPNIFCEATHGVQYLNEI 683          
The following BLAST results are available for this feature:
BLAST of CX289260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF2_BOVIN4.928e-2358.23Elongation factor 2 OS=Bos taurus GN=EEF2 PE=2 SV=... [more]
EF2_YEAST6.436e-2354.43Elongation factor 2 OS=Saccharomyces cerevisiae GN... [more]
EF2_PICGU1.434e-2256.96Elongation factor 2 OS=Pichia guilliermondii GN=EF... [more]
EF2_ENTHI1.873e-2257.50Elongation factor 2 OS=Entamoeba histolytica GN=EF... [more]
EF2_CANAL2.446e-2256.96Elongation factor 2 OS=Candida albicans GN=EFT2 PE... [more]
EF2_DEBHA3.194e-2256.96Elongation factor 2 OS=Debaryomyces hansenii GN=EF... [more]
EF2_CAEEL9.293e-2255.70Elongation factor 2 OS=Caenorhabditis elegans GN=e... [more]
EF2_DROME1.342e-2054.43Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_DICDI3.094e-1751.25Elongation factor 2 OS=Dictyostelium discoideum GN... [more]
EF2_BLAHO6.892e-1745.57Elongation factor 2 OS=Blastocystis hominis PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC02011A03SK IF1 Citrus clementina cDNA clone C02011A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289260 ID=CX289260; Name=CX289260; organism=Citrus clementina; type=EST; length=253bp
GATGAGTAAGTCTCCAACAAGCATAATCGTCTCTACATGGAAGCCCGACC
TCTGGAAGAAGGTCTTGCTGAGGCCATAGATGATGGCCGCATTGGTCCAA
GGGATGATCCCAAGGCTCGATCTAAGATCTTGTCTGAGGAGTTCGGCTGG
GACAAGGATCTTGCGAAGAAGATTTGGTGTTTTGGTCCTGAGACCACTGG
CCCTAACATGGTCGTTGATATGTGTAAGGGAGTTCAATACTTGAATGACA
TTA
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