CX289260

Overview
NameCX289260
Unique NameCX289260
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length253
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_STAMF (Elongation factor 2 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=fusA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.111e-12
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHN+LY+   PL+E     I DG I    DPK R+K+L EE GW  D A++IW         N+ VD+  GVQ+L ++
Sbjct:  487 NKHNKLYISVEPLDEKTISLIHDGIITEDMDPKQRAKVLREEAGWPTDQARRIWAIDENI---NVFVDLTTGVQHLREV 562          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLY    PL+E   E I    I    DP+ R+KIL E+ GWD D A+ IW         N++VD   G+QYL +I
Sbjct:  489 NKHNRLYFYVEPLDETTIELIATREITEDQDPRERAKILREKAGWDADEARGIWAIDDRFF--NLIVDRTSGIQYLREI 565          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_PYRCJ (Elongation factor 2 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLY    PL+E   E I    I    DP+ R+KIL E+ GWD D A+ +W         N++VD   G+QYL +I
Sbjct:  489 NKHNRLYFYVEPLDETTVELIATREITEEQDPRERAKILREKAGWDTDEARGVWAIDDRYF--NVIVDKTTGIQYLREI 565          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHN+LY+   PLE+ + E I  G I    DP+ R+K+L ++  WD D A++IW    E    N+ +D   GVQ+L ++
Sbjct:  490 NKHNKLYITVEPLEKEVIEMIQKGEITDDQDPRERAKVLRDKVNWDADTARRIWAVDEENF--NIFIDKTVGVQHLREV 566          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.487e-11
Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLY    PL+E   E I    I    DP+ R+KIL E+ GWD D A+ IW         N++VD   G+QYL +I
Sbjct:  489 NKHNRLYFYVEPLDETTIELIATKEITEDQDPRERAKILREKAGWDTDEARGIWAIDDRYF--NVIVDKTSGIQYLREI 565          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_PYRAR (Elongation factor 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=fusA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHN+LY    PL+E   E I    I    DP+ R+KIL E+ GWD D A+ IW         N++VD   G+QYL +I
Sbjct:  489 NKHNKLYFYVEPLDETTVELIATKEITEEQDPRERAKILREKAGWDTDEARGIWAIDDRYF--NVIVDKTTGIQYLREI 565          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_AERPE (Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.537e-11
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHN+LY+   PL E     I +G +    DPK R++IL+++ GWD + A+KIW         N+ VD   GVQYL ++
Sbjct:  487 NKHNKLYISVEPLNEETITLIQNGAVTEDQDPKDRARILADKAGWDYNEARKIWAIDENI---NVFVDKTAGVQYLREV 562          
BLAST of CX289260 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.313e-11
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   16 NKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKARSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNDI 252
            NKHNRLY    PL+E   E I    I    +P+ R+KIL E+ GWD D A+ IW         N++VD   G+QYL +I
Sbjct:  489 NKHNRLYFYVEPLDETTIELIASREITEDQEPRERAKILREKAGWDTDEARGIWAIDDRYF--NVIVDKTSGIQYLREI 565          
The following BLAST results are available for this feature:
BLAST of CX289260 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF2_STAMF5.111e-1243.04Elongation factor 2 OS=Staphylothermus marinus (st... [more]
EF2_THENV1.139e-1144.30Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
EF2_PYRCJ1.139e-1143.04Elongation factor 2 OS=Pyrobaculum calidifontis (s... [more]
EF2_IGNH41.139e-1139.24Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]
EF2_PYRIL1.487e-1144.30Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]
EF2_PYRAR1.942e-1143.04Elongation factor 2 OS=Pyrobaculum arsenaticum (st... [more]
EF2_AERPE2.537e-1140.51Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE... [more]
EF2_PYRAE3.313e-1143.04Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]

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Properties
Property NameValue
Genbank descriptionC02011A03SK IF1 Citrus clementina cDNA clone C02011A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289260 ID=CX289260; Name=CX289260; organism=Citrus clementina; type=EST; length=253bp
GATGAGTAAGTCTCCAACAAGCATAATCGTCTCTACATGGAAGCCCGACC
TCTGGAAGAAGGTCTTGCTGAGGCCATAGATGATGGCCGCATTGGTCCAA
GGGATGATCCCAAGGCTCGATCTAAGATCTTGTCTGAGGAGTTCGGCTGG
GACAAGGATCTTGCGAAGAAGATTTGGTGTTTTGGTCCTGAGACCACTGG
CCCTAACATGGTCGTTGATATGTGTAAGGGAGTTCAATACTTGAATGACA
TTA
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