CX289261

Overview
NameCX289261
Unique NameCX289261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14609 contig Ccv1_Contig14609:1109..1704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289261 vs. ExPASy Swiss-Prot
Match: OMT1_ORYSJ (Quercetin 3-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.369e-26
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    4 GDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 318
            GDAI MK +LHDW+DEHC +LLKNCY ++PE GKV+VVE +LPE  + +   +   H+D++M+  +PGGKER   EF  LA  AGF G        N W +EF K
Sbjct:  264 GDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLPESSDATAREQGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATYIYANAWAIEFTK 368          
BLAST of CX289261 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1
Query:    4 GDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 318
            GDAI MK +LHDW+D HC  LLKNCY ++PE+GKVIVVE +LP     + +++   H+D++M+  +PGGKER   EF  LA GAGF G        N W +EF K
Sbjct:  260 GDAILMKWILHDWSDAHCATLLKNCYDALPENGKVIVVECVLPVNTEATPKAQGVFHVDMIMLAHNPGGKERYEREFRELAKGAGFSGFKATYIYANAWAIEFIK 364          
BLAST of CX289261 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.753e-25
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    4 GDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 318
            GDAI MK +LHDW+D HC  LLKNCY ++PE+GKVI+VE +LP       +++   H+D++M+  +PGG+ER   EF  LA GAGF G        N W +EF K
Sbjct:  258 GDAILMKWILHDWSDAHCATLLKNCYDALPENGKVIIVECVLPVNTEAVPKAQGVFHVDMIMLAHNPGGRERYEREFHDLAKGAGFSGFKATYIYANAWAIEFIK 362          
BLAST of CX289261 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.417e-23
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 KGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 318
            + DAIFMK VLHDW+DEHC+K+L  CY+S+ + GK+I+VES++P +P  ++ES     LD   ++ + GGKER++ +F  LA+  GF  +       + WVME YK
Sbjct:  259 QADAIFMKWVLHDWSDEHCVKILNKCYESLAKGGKIILVESLIPVIPEDNLESHMVFSLDCHTLVHNQGGKERSKEDFEALASKTGFSTVDVICCAYDTWVMELYK 364          
BLAST of CX289261 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.582e-21
Identity = 53/108 (49.07%), Postives = 76/108 (70.37%), Query Frame = 1
Query:    1 KGDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFG--GISCELAIGNLWVMEFYK 318
            +GDA+ +K+V H+W+DE C++ L NC+K++  +GKVI+VE +LPE PNTS ESK  S LD LM I + GG+ERT  ++  L+  +GF    ++C  A  +L VMEFYK
Sbjct:  267 QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACR-AFNSLGVMEFYK 372          
BLAST of CX289261 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.621e-19
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 1
Query:   13 IFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGGISCELAIGNLWVMEFYK 318
            I +K VLHDW+D+  +K+LKNC+K++PE+G VIV+E +LP+V   + ES +    D+LMM  +PGGKERT  EF  LA  AGF           L VMEF+K
Sbjct:  277 ILLKWVLHDWDDDRSIKILKNCWKALPENGTVIVIEFVLPQVLGNNAESFNALTPDLLMMALNPGGKERTTIEFDGLAKAAGFAETKFFPISQGLHVMEFHK 378          
BLAST of CX289261 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGL (Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.612e-19
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 1
Query:    4 GDAIFMKSVLHDWNDEHCLKLLKNCYKSIPEDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERT 222
            GDA+FMK + HDW+DEHC KLLKNCY ++P +G+VIV E +LP  P+ S+ +K   H+D +M+    GGKERT
Sbjct:  241 GDAVFMKWICHDWSDEHCAKLLKNCYDALPVNGRVIVAEYILPAYPDQSLSTKGVIHMDCIMLTHFSGGKERT 313          
BLAST of CX289261 vs. ExPASy Swiss-Prot
Match: 6OMT_COPJA ((RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.920e-12
Identity = 39/90 (43.33%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    1 KGDAIFMKSVLHDWNDEHCLKLLKNCYKSIP-EDGKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGG 267
            K DAI MK +LHDW+D+ C+++LK C +++P + GKVI+V+ +L  V +    +K    LD+ MM+ + GGKERT  E+  L   AG+ G
Sbjct:  242 KADAIMMKCILHDWDDKECIEILKRCKEAVPVKGGKVIIVDIVL-NVQSEHPYTKMRLTLDLDMMLNT-GGKERTEEEWKKLIHDAGYKG 329          
BLAST of CX289261 vs. ExPASy Swiss-Prot
Match: 4OMT_COPJA (3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   10 AIFMKSVLHDWNDEHCLKLLKNCYKSIPED-GKVIVVESMLPEVPNTSIESKSNSHLDVLMMIQSPGGKERTRHEFMTLATGAGFGG 267
            AI +K +LHDWNDE  +K+LK C  ++P+D GKVI+V+  L E  +  + S +   LD+ M++ + GGKERT+  +  +   AGF G
Sbjct:  249 AIILKLILHDWNDEDSIKILKQCRNAVPKDGGKVIIVDVALDEESDHEL-SSTRLILDIDMLVNT-GGKERTKEVWEKIVKSAGFSG 333          
The following BLAST results are available for this feature:
BLAST of CX289261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
OMT1_ORYSJ1.369e-2650.48Quercetin 3-O-methyltransferase 1 OS=Oryza sativa ... [more]
COMT1_MAIZE6.796e-2650.48Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
COMT1_SACOF5.753e-2548.57Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
IMT1_MESCR1.417e-2345.28Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
CHOMT_MEDSA6.582e-2149.07Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]
SMT_COPJA1.621e-1949.02(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
COMT1_EUCGL3.612e-1954.79Caffeic acid 3-O-methyltransferase (Fragment) OS=E... [more]
6OMT_COPJA1.920e-1243.33(RS)-norcoclaurine 6-O-methyltransferase OS=Coptis... [more]
4OMT_COPJA7.294e-1242.533'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltran... [more]

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Properties
Property NameValue
Genbank descriptionC02011A04SK IF1 Citrus clementina cDNA clone C02011A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289261 ID=CX289261; Name=CX289261; organism=Citrus clementina; type=EST; length=596bp
AAAGGTGATGCCATTTTTATGAAGTCGGTACTGCACGATTGGAATGATGA
ACATTGCTTGAAGTTGTTGAAGAATTGCTACAAAAGCATCCCAGAAGATG
GAAAGGTAATCGTTGTGGAGTCAATGCTTCCAGAAGTTCCTAATACAAGC
ATTGAATCAAAATCAAATTCCCATTTGGACGTGCTTATGATGATTCAAAG
TCCCGGTGGAAAGGAGAGAACAAGGCATGAATTCATGACCCTGGCTACTG
GCGCTGGTTTTGGTGGGATCAGTTGTGAACTTGCTATTGGTAATCTCTGG
GTTATGGAGTTCTATAAGTAGAGTGCATGCCCATGCATCCTAGAAATAAA
GCAAATCTTGTGTTGATTGTCTTGCGTGTATCTCTTTCCAAGCATGCTGA
TATGTCTCCCAAAGACGAGCAAGAACCCATGCATTTGACAAACTTCCCAG
GTACCTGATAGCCATGCTTGAGAGGAGGAGTCTAGGACTTAATAATAAGT
GCTTTGAAATAAATGGGTGCTTGACACGTGGTCTATCAACTATTTGTGCA
ATATTGTTACCCATATTTCCTATTATTTCTAGTATTTCATGTGTTA
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