CX289265 | Citrus Genome Database

Overview


Name	CX289265
Unique Name	CX289265
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	422

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig183	contig	Ccv1_Contig183:49..470.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_PENCW (Autophagy-related protein 8 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_NEUCR (Autophagy-related protein 8 OS=Neurospora crassa GN=atg-8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_NEOFI (Autophagy-related protein 8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_EMENI (Autophagy-related protein 8 OS=Emericella nidulans GN=atg8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_COLLN (Autophagy-related protein 8 OS=Colletotrichum lindemuthianum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_ASPTN (Autophagy-related protein 8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_ASPOR (Autophagy-related protein 8 OS=Aspergillus oryzae GN=atg8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_ASPNC (Autophagy-related protein 8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_ASPFU (Autophagy-related protein 8 OS=Aspergillus fumigatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

[Close]

BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_ASPCL (Autophagy-related protein 8 OS=Aspergillus clavatus GN=atg8 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.138e-27
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = -3

Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116

The following BLAST results are available for this feature:

BLAST of CX289265 vs. ExPASy Swiss-Prot

BLAST of CX289265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73


Match Name	E-value	Identity	Description
ATG8_PENCW	1.138e-27	85.51	Autophagy-related protein 8 OS=Penicillium chrysog...	[more]
ATG8_NEUCR	1.138e-27	85.51	Autophagy-related protein 8 OS=Neurospora crassa G...	[more]
ATG8_NEOFI	1.138e-27	85.51	Autophagy-related protein 8 OS=Neosartorya fischer...	[more]
ATG8_EMENI	1.138e-27	85.51	Autophagy-related protein 8 OS=Emericella nidulans...	[more]
ATG8_COLLN	1.138e-27	85.51	Autophagy-related protein 8 OS=Colletotrichum lind...	[more]
ATG8_ASPTN	1.138e-27	85.51	Autophagy-related protein 8 OS=Aspergillus terreus...	[more]
ATG8_ASPOR	1.138e-27	85.51	Autophagy-related protein 8 OS=Aspergillus oryzae ...	[more]
ATG8_ASPNC	1.138e-27	85.51	Autophagy-related protein 8 OS=Aspergillus niger (...	[more]
ATG8_ASPFU	1.138e-27	85.51	Autophagy-related protein 8 OS=Aspergillus fumigat...	[more]
ATG8_ASPCL	1.138e-27	85.51	Autophagy-related protein 8 OS=Aspergillus clavatu...	[more]

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Properties


Property Name	Value
Genbank description	C02011A08SK IF1 Citrus clementina cDNA clone C02011A08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX289265 ID=CX289265; Name=CX289265; organism=Citrus clementina; type=EST; length=422bp
CCATCGAATTTAAATTATTCGCAATCATCATTCTTATACCACATAGTTTG
AACCGGCTATATACAAGCATAAAAGGGCATGTAAATAAAAAGCCGGATTA
TGACCGGCTCAAAGCCGGAAAACAAAAACACTAAATTCAAGATGGGTAGA
TTAACAAACGAAACGTTGGTAGAGGAAAAAGGGTAGCGGCCGATTATGCT
ATCCAAATGTGTTTTCACCACTGTAAGTAACATAGAGAAACCCATCTTCA
TCCTTTTTTTCATCATATATGGGAGACATTATTGCTCCTGGAGGCGGGAG
AACATTGCCCACAAATATAAAGATTGCCTTTTCTGCGCTCAGTTTAATTC
TCTTCCGTATCACATACACAAACTGACCCACTGTTAAGTCAGCAGGGACT
AAATATTTTGGGGGGGCCCGGT