CX289265

Overview
NameCX289265
Unique NameCX289265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.486e-27
Identity = 58/69 (84.06%), Postives = 63/69 (91.30%), Query Frame = -3 
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N+LPP  AIMS IY+E KDEDGFLY++YSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFG 117
[Close]
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.486e-27
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = -3 
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.486e-27
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = -3 
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYV+RKRIKLS EKAIFIFV N LPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.940e-27
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = -3 
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYV+RKRIKL AEKAIF+FV N LPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_COCIM (Autophagy-related protein 8 OS=Coccidioides immitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.534e-27
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = -3 
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KD+DGFLY+TYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDDDGFLYITYSGENTFG 116
[Close]
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_CHAGB (Autophagy-related protein 8 OS=Chaetomium globosum GN=ATG8 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.534e-27
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = -3 
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   48 KYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116
[Close]
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.534e-27
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = -3 
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLT+GQFVYV+RKRIKL AEKAIF+FV N LPP  A+MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   49 KYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.323e-27
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = -3 
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYV+RKRIKLS EKAIF+FV N LPP  ++MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.323e-27
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = -3 
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYV+RKRIKLS EKAIF+FV N LPP  ++MS IY+E KDEDGFLY+TYSGENTFG
Sbjct:   49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_SCLS1 (Autophagy-related protein 8 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=atg8 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.374e-27
Identity = 57/69 (82.61%), Postives = 62/69 (89.86%), Query Frame = -3 
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQFVYVIRKRIKLS EKAIFIFV  VLPP  A+MS IY+E KDEDGFLY++YSGENTFG
Sbjct:   48 KYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116
The following BLAST results are available for this feature:
BLAST of CX289265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATG8D_ARATH1.486e-2784.06Autophagy-related protein 8d OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ1.486e-2784.06Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI1.486e-2784.06Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8A_ARATH1.940e-2782.61Autophagy-related protein 8a OS=Arabidopsis thalia... [more]
ATG8_COCIM2.534e-2784.06Autophagy-related protein 8 OS=Coccidioides immiti... [more]
ATG8_CHAGB2.534e-2784.06Autophagy-related protein 8 OS=Chaetomium globosum... [more]
ATG8B_ARATH2.534e-2781.16Autophagy-related protein 8b OS=Arabidopsis thalia... [more]
ATG8A_ORYSJ4.323e-2781.16Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI4.323e-2781.16Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8_SCLS17.374e-2782.61Autophagy-related protein 8 OS=Sclerotinia sclerot... [more]

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Properties
Property NameValue
Genbank descriptionC02011A08SK IF1 Citrus clementina cDNA clone C02011A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289265 ID=CX289265; Name=CX289265; organism=Citrus clementina; type=EST; length=422bp
CCATCGAATTTAAATTATTCGCAATCATCATTCTTATACCACATAGTTTG
AACCGGCTATATACAAGCATAAAAGGGCATGTAAATAAAAAGCCGGATTA
TGACCGGCTCAAAGCCGGAAAACAAAAACACTAAATTCAAGATGGGTAGA
TTAACAAACGAAACGTTGGTAGAGGAAAAAGGGTAGCGGCCGATTATGCT
ATCCAAATGTGTTTTCACCACTGTAAGTAACATAGAGAAACCCATCTTCA
TCCTTTTTTTCATCATATATGGGAGACATTATTGCTCCTGGAGGCGGGAG
AACATTGCCCACAAATATAAAGATTGCCTTTTCTGCGCTCAGTTTAATTC
TCTTCCGTATCACATACACAAACTGACCCACTGTTAAGTCAGCAGGGACT
AAATATTTTGGGGGGGCCCGGT
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