CX289265

Overview
NameCX289265
Unique NameCX289265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig183 contig Ccv1_Contig183:49..470. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_YEAST (Autophagy-related protein 8 OS=Saccharomyces cerevisiae GN=ATG8 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.391e-25
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV + LPP  A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_YEAS7 (Autophagy-related protein 8 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.391e-25
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV + LPP  A+MS IY E KD+DGFLYVTYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_PICST (Autophagy-related protein 8 OS=Pichia stipitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.391e-25
Identity = 56/75 (74.67%), Postives = 64/75 (85.33%), Query Frame = -3
Query:  184 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG*HNRPL 408
            KYLVP DL+VGQFVYVIRKRIKL +EKAIFIFV ++LPP  A++S IY+E KDEDGFLYV YSGENTFG   +PL
Sbjct:   48 KYLVPVDLSVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFG-QKKPL 121          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_VANPO (Autophagy-related protein 8 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.046e-25
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQFVYVIRKRI L  EKAIFIFV + LPP  A+MS +Y E KD+DGFLYVTYSGENTFG
Sbjct:   48 KYLVPSDLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAVYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_PICAN (Autophagy-related protein 8 OS=Pichia angusta GN=ATG8 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.046e-25
Identity = 52/69 (75.36%), Postives = 62/69 (89.86%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQFVYVIRKRI+L +EKAIFIFV ++LPP  ++MS IY++ KDEDGFLY+ YSGENTFG
Sbjct:   48 KYLVPSDLTVGQFVYVIRKRIQLPSEKAIFIFVNDILPPTASLMSTIYEQYKDEDGFLYILYSGENTFG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_CANGA (Autophagy-related protein 8 OS=Candida glabrata GN=ATG8 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.046e-25
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIRKRI L  EKAIFIFV + LPP  ++MS +Y E KD+DGFLYVTYSGENTFG
Sbjct:   48 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTASLMSQVYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_ASHGO (Autophagy-related protein 8 OS=Ashbya gossypii GN=ATG8 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.284e-25
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPADLTVGQFVYVIR+RIKL AEKAIFIFV + LPP  A+M  +Y E KD+DGFLYV YSGENTFG
Sbjct:   47 KYLVPADLTVGQFVYVIRRRIKLPAEKAIFIFVNDTLPPTAALMFAVYQEHKDKDGFLYVKYSGENTFG 115          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_KLULA (Autophagy-related protein 8 OS=Kluyveromyces lactis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.901e-25
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP DLTVGQFVYVIRKRIKL AEKAIFIFV + LPP  A+MS IY + KD+DGFLYV+YS ENTFG
Sbjct:   48 KYLVPGDLTVGQFVYVIRKRIKLPAEKAIFIFVNDTLPPTAALMSSIYQQHKDKDGFLYVSYSSENTFG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8_DICDI (Autophagy-related protein 8 OS=Dictyostelium discoideum GN=atg8 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.439e-22
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRI-KLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVPAD+TVG+FVY IRK + K+SAEKAI++FV N +PP  A++S IY+  KDEDGFLY+TYSGENTFG
Sbjct:   50 KYLVPADITVGKFVYEIRKHMTKVSAEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFG 119          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL2_RAT (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.001e-20
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+D+TV QF+++IRKRI+L +EKAIF+FV   +P     M  +Y+++KDEDGFLYV YSGENTFG
Sbjct:   48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CX289265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATG8_YEAST1.391e-2581.16Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_YEAS71.391e-2581.16Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_PICST1.391e-2574.67Autophagy-related protein 8 OS=Pichia stipitis GN=... [more]
ATG8_VANPO4.046e-2578.26Autophagy-related protein 8 OS=Vanderwaltozyma pol... [more]
ATG8_PICAN4.046e-2575.36Autophagy-related protein 8 OS=Pichia angusta GN=A... [more]
ATG8_CANGA4.046e-2578.26Autophagy-related protein 8 OS=Candida glabrata GN... [more]
ATG8_ASHGO5.284e-2578.26Autophagy-related protein 8 OS=Ashbya gossypii GN=... [more]
ATG8_KLULA6.901e-2578.26Autophagy-related protein 8 OS=Kluyveromyces lacti... [more]
ATG8_DICDI1.439e-2270.00Autophagy-related protein 8 OS=Dictyostelium disco... [more]
GBRL2_RAT3.001e-2062.32Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionC02011A08SK IF1 Citrus clementina cDNA clone C02011A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289265 ID=CX289265; Name=CX289265; organism=Citrus clementina; type=EST; length=422bp
CCATCGAATTTAAATTATTCGCAATCATCATTCTTATACCACATAGTTTG
AACCGGCTATATACAAGCATAAAAGGGCATGTAAATAAAAAGCCGGATTA
TGACCGGCTCAAAGCCGGAAAACAAAAACACTAAATTCAAGATGGGTAGA
TTAACAAACGAAACGTTGGTAGAGGAAAAAGGGTAGCGGCCGATTATGCT
ATCCAAATGTGTTTTCACCACTGTAAGTAACATAGAGAAACCCATCTTCA
TCCTTTTTTTCATCATATATGGGAGACATTATTGCTCCTGGAGGCGGGAG
AACATTGCCCACAAATATAAAGATTGCCTTTTCTGCGCTCAGTTTAATTC
TCTTCCGTATCACATACACAAACTGACCCACTGTTAAGTCAGCAGGGACT
AAATATTTTGGGGGGGCCCGGT
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