CX289265

Overview
NameCX289265
Unique NameCX289265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig183 contig Ccv1_Contig183:49..470. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.001e-20
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+D+TV QF+++IRKRI+L +EKAIF+FV   +P     M  +Y+++KDEDGFLYV YSGENTFG
Sbjct:   48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.001e-20
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+D+TV QF+++IRKRI+L +EKAIF+FV   +P     M  +Y+++KDEDGFLYV YSGENTFG
Sbjct:   48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.001e-20
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+D+TV QF+++IRKRI+L +EKAIF+FV   +P     M  +Y+++KDEDGFLYV YSGENTFG
Sbjct:   48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.790e-18
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L AE A+F FV NV+PP  A M  +Y E  +ED FLY+ YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.790e-18
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L AE A+F FV NV+PP  A M  +Y E  +ED FLY+ YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.790e-18
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L AE A+F FV NV+PP  A M  +Y E  +ED FLY+ YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.790e-18
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L AE A+F FV NV+PP  A M  +Y E  +ED FLY+ YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.790e-18
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L AE A+F FV NV+PP  A M  +Y E  +ED FLY+ YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.820e-17
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L  E A+F FV N +PP  A M  +Y++ ++ED FLYV YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L  E A+F FV N +PP  A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of CX289265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
GBRL2_MOUSE3.001e-2062.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN3.001e-2062.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN3.001e-2062.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT4.790e-1859.42Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT4.790e-1859.42Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE4.790e-1859.42Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN4.790e-1859.42Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_BOVIN4.790e-1859.42Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB1.820e-1756.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR4.055e-1756.52Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionC02011A08SK IF1 Citrus clementina cDNA clone C02011A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289265 ID=CX289265; Name=CX289265; organism=Citrus clementina; type=EST; length=422bp
CCATCGAATTTAAATTATTCGCAATCATCATTCTTATACCACATAGTTTG
AACCGGCTATATACAAGCATAAAAGGGCATGTAAATAAAAAGCCGGATTA
TGACCGGCTCAAAGCCGGAAAACAAAAACACTAAATTCAAGATGGGTAGA
TTAACAAACGAAACGTTGGTAGAGGAAAAAGGGTAGCGGCCGATTATGCT
ATCCAAATGTGTTTTCACCACTGTAAGTAACATAGAGAAACCCATCTTCA
TCCTTTTTTTCATCATATATGGGAGACATTATTGCTCCTGGAGGCGGGAG
AACATTGCCCACAAATATAAAGATTGCCTTTTCTGCGCTCAGTTTAATTC
TCTTCCGTATCACATACACAAACTGACCCACTGTTAAGTCAGCAGGGACT
AAATATTTTGGGGGGGCCCGGT
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