CX289265

Overview
NameCX289265
Unique NameCX289265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig183 contig Ccv1_Contig183:49..470. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L  E A+F FV N +PP  A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L  E A+F FV N +PP  A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L  E A+F FV N +PP  A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L  E A+F FV N +PP  A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L  E A+F FV N +PP  A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI L  E A+F FV N +PP  A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8I_ARATH (Autophagy-related protein 8i OS=Arabidopsis thaliana GN=ATG8I PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            K+LVP D++VGQF+Y++  R+ LS  KA+F+FV N LP   A+M  +Y+  KD+DGF+Y+ YS E TFG
Sbjct:   47 KFLVPRDMSVGQFIYILSARLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDDDGFVYMCYSSEKTFG 115          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.433e-16
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLT GQF  +IRKRI L  E A+F FV N +PP  A M  +Y++  +ED FLYV YS E+ +G
Sbjct:   48 KYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP D+TVG F++++ KR++L   KA+F+FV N LP   + M  +Y+  K+EDGFLY+ YS E TFG
Sbjct:   51 KYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.704e-15
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            KYLVP+DLTVGQF ++IRKRI+L  E A+F FV NV+P     M  +Y +  +ED FLY+ YS E+ +G
Sbjct:   48 KYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of CX289265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
GBRL1_XENLA4.055e-1756.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT4.055e-1756.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE4.055e-1756.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN4.055e-1756.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO4.055e-1756.52Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN4.055e-1756.52Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8I_ARATH4.055e-1752.17Autophagy-related protein 8i OS=Arabidopsis thalia... [more]
GBRL3_HUMAN3.433e-1655.07Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8H_ARATH1.305e-1552.17Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
LGG1_CAEEL1.704e-1553.62Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]

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Properties
Property NameValue
Genbank descriptionC02011A08SK IF1 Citrus clementina cDNA clone C02011A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289265 ID=CX289265; Name=CX289265; organism=Citrus clementina; type=EST; length=422bp
CCATCGAATTTAAATTATTCGCAATCATCATTCTTATACCACATAGTTTG
AACCGGCTATATACAAGCATAAAAGGGCATGTAAATAAAAAGCCGGATTA
TGACCGGCTCAAAGCCGGAAAACAAAAACACTAAATTCAAGATGGGTAGA
TTAACAAACGAAACGTTGGTAGAGGAAAAAGGGTAGCGGCCGATTATGCT
ATCCAAATGTGTTTTCACCACTGTAAGTAACATAGAGAAACCCATCTTCA
TCCTTTTTTTCATCATATATGGGAGACATTATTGCTCCTGGAGGCGGGAG
AACATTGCCCACAAATATAAAGATTGCCTTTTCTGCGCTCAGTTTAATTC
TCTTCCGTATCACATACACAAACTGACCCACTGTTAAGTCAGCAGGGACT
AAATATTTTGGGGGGGCCCGGT
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