CX289265

Overview
NameCX289265
Unique NameCX289265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length422
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.906e-15
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNVLPPPGAIMSPIYDEKKDE-DGFLYVTYSGENTFG 408
            KYLVP ++ VGQF++++R R+ LS   A+F+FV N LP    +M  +Y+  KDE DGFLY+ YS E TFG
Sbjct:   49 KYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.349e-14
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLS---AEKAIFIFVG-NVLPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            K+L P+++ +  F+  IRK +  S    +KAIF+FV  N LPP   ++S IYD  KDEDGFLY+ YSGENTFG
Sbjct:   51 KFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of CX289265 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = -3
Query:  202 KYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVGNV-LPPPGAIMSPIYDEKKDEDGFLYVTYSGENTFG 408
            K+LVP +LT+ QF+ +IR R+ L A +A ++ V N  L    A M+ IY + KDEDGF+Y+TY+ + TFG
Sbjct:   57 KFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
The following BLAST results are available for this feature:
BLAST of CX289265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATG8D_ORYSJ2.906e-1551.43Autophagy-related protein 8D OS=Oryza sativa subsp... [more]
ATG8L_DICDI9.349e-1452.05Autophagy-related protein 8-like protein DDB_G0290... [more]
MLP3C_HUMAN4.343e-1147.14Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionC02011A08SK IF1 Citrus clementina cDNA clone C02011A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289265 ID=CX289265; Name=CX289265; organism=Citrus clementina; type=EST; length=422bp
CCATCGAATTTAAATTATTCGCAATCATCATTCTTATACCACATAGTTTG
AACCGGCTATATACAAGCATAAAAGGGCATGTAAATAAAAAGCCGGATTA
TGACCGGCTCAAAGCCGGAAAACAAAAACACTAAATTCAAGATGGGTAGA
TTAACAAACGAAACGTTGGTAGAGGAAAAAGGGTAGCGGCCGATTATGCT
ATCCAAATGTGTTTTCACCACTGTAAGTAACATAGAGAAACCCATCTTCA
TCCTTTTTTTCATCATATATGGGAGACATTATTGCTCCTGGAGGCGGGAG
AACATTGCCCACAAATATAAAGATTGCCTTTTCTGCGCTCAGTTTAATTC
TCTTCCGTATCACATACACAAACTGACCCACTGTTAAGTCAGCAGGGACT
AAATATTTTGGGGGGGCCCGGT
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