CX289268

Overview
NameCX289268
Unique NameCX289268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SHESH (Bifunctional polymyxin resistance protein arnA OS=Shewanella sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 55/219 (25.11%), Postives = 102/219 (46.58%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPI------GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL  +L+++ K E+  +D     S   + + + HP F  +  D+T      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +  + +P+        R  Y   K++ + +++ Y ++  ++  + R FN  GPR++      +   R ++  I   + G P+ +   G Q R
Sbjct:  327 GFIGNHLTKRLLDDGKYEIYAMDM----SSSQIEQHLSHPDFHFVEGDITIHNEWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRACVKYDKRIIFPSTSEVYG----MCTDEEFDEDTSPLITGPINRQRWIYSTSKQLLDRVIWAYGKKDNLKFTLFRPFNWMGPRLDSLNSARVGSSRAITQLILNLVEGTPIKLIDGGEQKR 537          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 60/216 (27.78%), Postives = 104/216 (48.15%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ +   ++  +D    GS   + ++I +PRF  I  D+       E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D+S    V PI   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLRDGNYDIYGMD---IGSSA-IERFISNPRFHFIEGDINIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDKEFDEDDSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14
Identity = 59/215 (27.44%), Postives = 103/215 (47.91%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLCEDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SALTI (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhi GN=arnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14
Identity = 59/215 (27.44%), Postives = 103/215 (47.91%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L++ E  EV  +D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG       DE      V P+   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLDEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SALPK (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14
Identity = 59/215 (27.44%), Postives = 103/215 (47.91%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L++ E  EV  +D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG       DE      V P+   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLDEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SALPA (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A GN=arnA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14
Identity = 59/215 (27.44%), Postives = 103/215 (47.91%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L++ E  EV  +D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG       DE      V P+   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLDEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 59/215 (27.44%), Postives = 105/215 (48.84%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L++++  E+  +D    GS D + +++  PRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE      V PI   R  Y   K++ + +++ Y  ++G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLQDDNYEIYGLD---IGS-DAISRFLDCPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SHIFL (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri GN=arnA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 58/215 (26.98%), Postives = 102/215 (47.44%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  +   FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SHIF8 (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri serotype 5b (strain 8401) GN=arnA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 58/215 (26.98%), Postives = 102/215 (47.44%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE +    V P+   R  Y   K++ + +++ Y  + G++  +   FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SALTY (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhimurium GN=arnA PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14
Identity = 59/215 (27.44%), Postives = 102/215 (47.44%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+  E  EV  +D    GS + + +++ HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG       DE      V P+   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLNEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKR 535          
The following BLAST results are available for this feature:
BLAST of CX289268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ARNA_SHESH1.258e-1425.11Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PHOLL1.258e-1427.78Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL51.258e-1427.44Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTI1.642e-1427.44Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPK1.642e-1427.44Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALPA1.642e-1427.44Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP72.145e-1427.44Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIFL2.802e-1426.98Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIF82.802e-1426.98Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTY2.802e-1427.44Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC02011A11SK IF1 Citrus clementina cDNA clone C02011A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289268 ID=CX289268; Name=CX289268; organism=Citrus clementina; type=EST; length=608bp
TGGATTTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGA
ACGAGGTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTA
AGGAAATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGAC
TGAGCCATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTG
CCTCCCCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAAT
GTGATTGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAG
GATTTTGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATC
CCCAGGATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGT
TGCTATGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCA
TCGGCAGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATG
GACCCCGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCT
CAAGCAATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAAAC
TCGTAGTT
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