CX289268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SHESH (Bifunctional polymyxin resistance protein arnA OS=Shewanella sediminis (strain HAW-EB3) GN=arnA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14 Identity = 55/219 (25.11%), Postives = 102/219 (46.58%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPI------GVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL +L+++ K E+ +D S + + + HP F + D+T E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG DE + + +P+ R Y K++ + +++ Y ++ ++ + R FN GPR++ + R ++ I + G P+ + G Q R Sbjct: 327 GFIGNHLTKRLLDDGKYEIYAMDM----SSSQIEQHLSHPDFHFVEGDITIHNEWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRACVKYDKRIIFPSTSEVYG----MCTDEEFDEDTSPLITGPINRQRWIYSTSKQLLDRVIWAYGKKDNLKFTLFRPFNWMGPRLDSLNSARVGSSRAITQLILNLVEGTPIKLIDGGEQKR 537
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14 Identity = 60/216 (27.78%), Postives = 104/216 (48.15%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+ + ++ +D GS + ++I +PRF I D+ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG D +D+S V PI R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 325 GFIGNHLTERLLRDGNYDIYGMD---IGSSA-IERFISNPRFHFIEGDINIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYGMCDDKEFDEDDSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFTLFRPFNWMGPRLDNLNSARIGSSRAITQLILNLVEGSPIKLVDGGEQKR 535
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL5 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=arnA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.258e-14 Identity = 59/215 (27.44%), Postives = 103/215 (47.91%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+ + EV +D GS D + +++ HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG DE + V P+ R Y K++ + +++ Y + G++ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 325 GFIGNHLTERLLCEDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKR 535
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SALTI (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhi GN=arnA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14 Identity = 59/215 (27.44%), Postives = 103/215 (47.91%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L++ E EV +D GS + + +++ HPRF + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG DE V P+ R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 325 GFIGNHLTERLLDEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKR 535
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SALPK (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A (strain AKU_12601) GN=arnA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14 Identity = 59/215 (27.44%), Postives = 103/215 (47.91%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L++ E EV +D GS + + +++ HPRF + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG DE V P+ R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 325 GFIGNHLTERLLDEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKR 535
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SALPA (Bifunctional polymyxin resistance protein arnA OS=Salmonella paratyphi A GN=arnA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14 Identity = 59/215 (27.44%), Postives = 103/215 (47.91%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L++ E EV +D GS + + +++ HPRF + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG DE V P+ R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 325 GFIGNHLTERLLDEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKR 535
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14 Identity = 59/215 (27.44%), Postives = 105/215 (48.84%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L++++ E+ +D GS D + +++ PRF + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG DE V PI R Y K++ + +++ Y ++G++ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 325 GFIGNHLTERLLQDDNYEIYGLD---IGS-DAISRFLDCPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKR 535
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SHIFL (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri GN=arnA PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14 Identity = 58/215 (26.98%), Postives = 102/215 (47.44%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+ + EV +D GS D + +++ HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG DE + V P+ R Y K++ + +++ Y + G++ + FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 325 GFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKR 535
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SHIF8 (Bifunctional polymyxin resistance protein arnA OS=Shigella flexneri serotype 5b (strain 8401) GN=arnA PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14 Identity = 58/215 (26.98%), Postives = 102/215 (47.44%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+ + EV +D GS D + +++ HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + RI+ STSEVYG DE + V P+ R Y K++ + +++ Y + G++ + FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 325 GFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFLPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKR 535
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SALTY (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhimurium GN=arnA PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.802e-14 Identity = 59/215 (27.44%), Postives = 102/215 (47.44%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+ E EV +D GS + + +++ HPRF + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG DE V P+ R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 325 GFIGNHLTERLLNEENYEVYGMD---IGS-NAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGSSRAITQLILNLVEGTPIKLIDGGQQKR 535 The following BLAST results are available for this feature:
BLAST of CX289268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289268 ID=CX289268; Name=CX289268; organism=Citrus clementina; type=EST; length=608bpback to top |