CX289268

Overview
NameCX289268
Unique NameCX289268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14125 contig Ccv1_Contig14125:229..836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ACBB_ACTS5 (dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain 50/110) GN=acbB PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 63/215 (29.30%), Postives = 96/215 (44.65%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENE------KNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIEV-----DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIGSH V  L+  +        +V VVD   + G+  NL +    PRF  +R D+ +  LIE      D + H A               + +N++GT  +L  A R  +G R L  ST EVYG       D   W   +P+   S Y   K  ++ L   YH+ HG+++ + R  N YGPR   +  +++  F+ + + G  + V   G   R
Sbjct:   10 GFIGSHFVTSLISGDIATPQPVTQVTVVDKLGYGGNLRNLAEASADPRFSFVRGDICDEGLIEGLMARHDTVAHFAAETHVDRSVVASGPFVASNLVGTQVLLDAALRHHIG-RFLHVSTDEVYGSI-----DTGSWAEGHPLAPNSPYAASKAGSDLLALAYHQTHGMDVVVTRCSNNYGPRQFPE--KMIPLFVTRLLDGLDVPVYGDGRNIR 216          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.151e-14
Identity = 58/215 (26.98%), Postives = 104/215 (48.37%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L++++  E+  +D    GS D + +++  PRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG       DE      V PI   R  Y   K++ + +++ Y  ++ ++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLQDDNYEIYGLD---IGS-DAISRFLESPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFDEDTSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKYDLKFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIEGGKQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: YFNG_BACSU (Putative sugar dehydratase/epimerase yfnG OS=Bacillus subtilis GN=yfnG PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 55/210 (26.19%), Postives = 102/210 (48.57%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            G +GS+LV +L+E   N   +V ++   S  NL +     +  ++R  + +  +IE       +D ++HLA  A       NP+ T + N++GT N+L   ++  +  R+++ S+ + YGD    P DE+      P+  +  YD  K  A+ +   Y   +G+ + I R  N YG   +++  R++   I   + GE   +++ GT  R
Sbjct:   16 GLLGSYLVKELIEQGANVTGLVRDHVPQS--NLYQGEHIKKMNIVRGSLEDLAVIERALGEYEIDTVFHLAAQAIVGVANRNPISTFEANILGTWNILEACRKHPLIKRVIVASSDKAYGDQENLPYDENM-----PLQGKHPYDVSKSCADLISHTYFHTYGLPVCITRCGNLYGGG-DLNFNRIIPQTIQLVLNGEAPEIRSDGTFVR 217          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.390e-13
Identity = 60/216 (27.78%), Postives = 104/216 (48.15%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG--DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ + + EV  +D    GS D + +++ +P F  +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG  D     +D S    V PI   R  Y   K++ + +++ Y  +  ++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  325 GFIGNHLTERLLRDNRYEVYGLD---IGS-DAICRFLDNPNFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYGMCDDKEFDEDSSRL-IVGPINKQRWIYSVSKQLLDRVIWAYGAKENLKFTLFRPFNWMGPRLDNLDAARIGSSRAITQLILNLVEGSPIKLVDGGEQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_SODGM (Bifunctional polymyxin resistance protein arnA OS=Sodalis glossinidius (strain morsitans) GN=arnA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 57/217 (26.27%), Postives = 101/217 (46.54%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ +   E+  +D       D + +++ +P F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  STSEVYG   DP+    D S    V PI   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G  + +   G Q R
Sbjct:  325 GFIGNHLTERLLRDGNYEIYGLDI----GTDAISRFMVNPLFHFVEGDISIHSEWIEYHIKKCDIVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRHCVKYQKRIIFPSTSEVYGMCTDPVFDEDDSSL--IVGPINKQRWIYSVSKQLLDRVLWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSHIKLVDGGAQKR 535          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 61/215 (28.37%), Postives = 102/215 (47.44%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ +E+ EV  +D    GS D + +   HPRF  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG       DE      V PI   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  328 GFIGNHLSERLLRDERYEVYGLD---IGS-DAIDRLRSHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDKHFDEDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKR 537          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.013e-13
Identity = 59/219 (26.94%), Postives = 105/219 (47.95%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ ++K +V  +D    GS D + +   HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG      QD+++  +     V PI   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  328 GFIGNHLSERLLRDDKYDVYGLD---IGS-DAIERLRSHPNFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG----MCQDKNFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKR 537          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 64/212 (30.19%), Postives = 95/212 (44.81%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNY-----FTGSKDNLRKWIGHPRFELIRHDV----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIGSHL ++L++++K+ VI +D++     F+    NL+  +   RF  I+ ++       LL  VD I+HLA          N       + I  L  L  A R  +    +  STS VYG+      + +    ++P GV       K   E L   Y +  GI I I R F  YGPR   D        I Q ++ +PLT+   G Q+R
Sbjct:   10 GFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIKENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQTFVFASTSSVYGEKQGKVSENTSLSPLSPYGVT------KLTGEKLCHVYKQSFGIPIVILRFFTVYGPRQRPD--MAFHRLIKQHLQQKPLTIFGDGQQSR 213          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 62/217 (28.57%), Postives = 96/217 (44.24%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS 607
            GFI SH+ ++L+ +  + +++V+D   +  +  NL      P F+ ++ D+    L+       E+D I H A          N  +  K N+ GT  +L   K  G   R +  ST EVYG    D  V   + S     NP      Y   K  AE L+  Y R +G+ +   R  N YGP  N    +++  FI  A+ G+PL +   G+  RS
Sbjct:   16 GFIASHVANRLVRSYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEEIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDASVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKLIPKFILLAMNGKPLPIHGDGSNVRS 224          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: RHM2_ARATH (Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana GN=RHM2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 62/217 (28.57%), Postives = 94/217 (43.32%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS 607
            GFI SH+ ++L+ N  + +++V+D   +     NL      P F+ ++ D+    L+        +D I H A          N  +  K N+ GT  +L   K  G   R +  ST EVYG    D  V   + S     NP      Y   K  AE L+  Y R +G+ +   R  N YGP  N    +++  FI  A+ G+PL +   G+  RS
Sbjct:   18 GFIASHVANRLIRNYPDYKIVVLDKLDYCSDLKNLDPSFSSPNFKFVKGDIASDDLVNYLLITENIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAAVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKMIPKFILLAMSGKPLPIHGDGSNVRS 226          
The following BLAST results are available for this feature:
BLAST of CX289268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ACBB_ACTS53.659e-1429.30dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (... [more]
ARNA_KLEP38.151e-1426.98Bifunctional polymyxin resistance protein arnA OS=... [more]
YFNG_BACSU1.390e-1326.19Putative sugar dehydratase/epimerase yfnG OS=Bacil... [more]
ARNA_YERE81.390e-1327.78Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SODGM1.816e-1326.27Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEPF2.372e-1328.37Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEF59.013e-1326.94Bifunctional polymyxin resistance protein arnA OS=... [more]
YTCB_BACSU1.537e-1230.19Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
RHM3_ARATH1.537e-1228.57Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
RHM2_ARATH1.537e-1228.57Probable rhamnose biosynthetic enzyme 2 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC02011A11SK IF1 Citrus clementina cDNA clone C02011A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289268 ID=CX289268; Name=CX289268; organism=Citrus clementina; type=EST; length=608bp
TGGATTTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGA
ACGAGGTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTA
AGGAAATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGAC
TGAGCCATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTG
CCTCCCCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAAT
GTGATTGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAG
GATTTTGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATC
CCCAGGATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGT
TGCTATGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCA
TCGGCAGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATG
GACCCCGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCT
CAAGCAATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAAAC
TCGTAGTT
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