CX289268

Overview
NameCX289268
Unique NameCX289268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 59/219 (26.94%), Postives = 105/219 (47.95%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+++++ E+  +D    GS D + +    P F  I  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG      QD ++  +     V PI   R  Y   K++ + +++ Y  Q G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  329 GFIGNHLSERLLQDDRYEIYGMD---IGS-DAIERLRAKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG----MCQDANFNEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 538          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 58/215 (26.98%), Postives = 101/215 (46.98%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ +++ EV  +D    GS D + +   HP F  +  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG       DE      V P+   R  Y   K++ + +++ Y  + G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  328 GFIGNHLSERLLRDDRYEVYGLD---IGS-DAIERLRSHPNFHYVEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDQYFDEDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKR 537          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 59/219 (26.94%), Postives = 105/219 (47.95%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+++++ ++  +D    GS D + +    P F  I  D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   R++  STSEVYG      QD S+  +     V PI   R  Y   K++ + +++ Y  Q G++  + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  328 GFIGNHLSERLLQDDRYDIYGMD---IGS-DAIERLRTKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG----MCQDASFNEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 537          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: RFBB_NEIGO (dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12
Identity = 58/219 (26.48%), Postives = 102/219 (46.58%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIGS +V  +++N ++ V+ +D   + G+ ++L     +PR+   + D+ +   ++        D + HLA  +       +  + I+TN++GT ++L  A          KR   R    ST EVYGD  +H  D+ +     P    S Y   K  A+ L+  + R + +   ++   N YGPR   +  +++   I  A+ G+PL V   G Q R
Sbjct:   16 GFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEKREAFRFHHISTDEVYGD--LHGTDDLFT-ETTPYAPSSPYSASKAAADHLVRAWQRTYRLPSIVSNCSNNYGPRQFPE--KLIPLMILNALSGKPLPVYGDGAQIR 229          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12
Identity = 63/217 (29.03%), Postives = 103/217 (47.47%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ + + EV  +D    GS D + +    P F  +  D+       E  + + D I  L   A+PI Y  NP++  + +    L ++    + G R++  STSEVYG   DP    +D S    V PI   R  Y   K++ + +++ Y +Q G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  327 GFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 536          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12
Identity = 63/217 (29.03%), Postives = 103/217 (47.47%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ + + EV  +D    GS D + +    P F  +  D+       E  + + D I  L   A+PI Y  NP++  + +    L ++    + G R++  STSEVYG   DP    +D S    V PI   R  Y   K++ + +++ Y +Q G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  327 GFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 536          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12
Identity = 63/217 (29.03%), Postives = 103/217 (47.47%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ + + EV  +D    GS D + +    P F  +  D+       E  + + D I  L   A+PI Y  NP++  + +    L ++    + G R++  STSEVYG   DP    +D S    V PI   R  Y   K++ + +++ Y +Q G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  327 GFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLESARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 536          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 62/217 (28.57%), Postives = 96/217 (44.24%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS 607
            GFI SH+ ++L+ +  + +++V+D   +  +  NL      P F+ ++ D+    L+        +D I H A          N  +  K N+ GT  +L   K  G   R +  ST EVYG    D LV   + S     NP      Y   K  AE L+  Y R +G+ +   R  N YGP  N    +++  FI  A+RG+ L +   G+  RS
Sbjct:   16 GFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKLIPKFILLAMRGQVLPIHGDGSNVRS 224          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12
Identity = 62/217 (28.57%), Postives = 103/217 (47.47%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIG+HL ++L+ + + EV  +D    GS D + +    P F  +  D+       E  + + D +  L   A+PI Y  NP++  + +    L ++    + G R++  STSEVYG   DP    +D S    V PI   R  Y   K++ + +++ Y +Q G+   + R FN  GPR++      I   R ++  I   + G P+ +   G Q R
Sbjct:  327 GFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 536          
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: RFFG_HAEIN (dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae GN=rffG PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 56/219 (25.57%), Postives = 100/219 (45.66%), Query Frame = 2
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----------RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604
            GFIGS L+  ++ + ++ VI +D   +  ++  LR+   +PR+   + D+ +  +IE        D + HLA  +            ++TN++GT  +L +AK          +   R    ST EVYGD  +    E  +   +P    S Y   K  +  L+  +HR +G+ + I    N YG   + +  +++   I+ A+ G+PL +   G Q R
Sbjct:   11 GFIGSALIRYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDEAKKTTFRFHHISTDEVYGDLSL---SEPAFTEQSPYHPSSPYSASKAASNHLVQAWHRTYGLPVIITNSSNNYGAYQHAE--KLIPLMISNAVMGKPLPIYGDGQQIR 224          
The following BLAST results are available for this feature:
BLAST of CX289268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ARNA_PSEU21.537e-1226.94Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEFS2.008e-1226.98Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSE142.622e-1226.94Bifunctional polymyxin resistance protein arnA OS=... [more]
RFBB_NEIGO3.425e-1226.48dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrho... [more]
ARNA_PSEAE3.425e-1229.03Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA83.425e-1229.03Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA73.425e-1229.03Bifunctional polymyxin resistance protein arnA OS=... [more]
RHM1_ARATH4.473e-1228.57Probable rhamnose biosynthetic enzyme 1 OS=Arabido... [more]
ARNA_PSEAB4.473e-1228.57Bifunctional polymyxin resistance protein arnA OS=... [more]
RFFG_HAEIN2.220e-1125.57dTDP-glucose 4,6-dehydratase OS=Haemophilus influe... [more]

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Properties
Property NameValue
Genbank descriptionC02011A11SK IF1 Citrus clementina cDNA clone C02011A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289268 ID=CX289268; Name=CX289268; organism=Citrus clementina; type=EST; length=608bp
TGGATTTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGA
ACGAGGTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTA
AGGAAATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGAC
TGAGCCATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTG
CCTCCCCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAAT
GTGATTGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAG
GATTTTGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATC
CCCAGGATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGT
TGCTATGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCA
TCGGCAGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATG
GACCCCGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCT
CAAGCAATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAAAC
TCGTAGTT
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