CX289268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12 Identity = 59/219 (26.94%), Postives = 105/219 (47.95%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+++++ E+ +D GS D + + P F I D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG QD ++ + V PI R Y K++ + +++ Y Q G++ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 329 GFIGNHLSERLLQDDRYEIYGMD---IGS-DAIERLRAKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG----MCQDANFNEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 538
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12 Identity = 58/215 (26.98%), Postives = 101/215 (46.98%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWG-NVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+ +++ EV +D GS D + + HP F + D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG DE V P+ R Y K++ + +++ Y + G+ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 328 GFIGNHLSERLLRDDRYEVYGLD---IGS-DAIERLRSHPNFHYVEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYGMCQDQYFDEDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILNLVEGTPIRLFDGGEQKR 537
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12 Identity = 59/219 (26.94%), Postives = 105/219 (47.95%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-----VNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+++++ ++ +D GS D + + P F I D++ E + + D + L A+PI Y NP++ + + L ++ + R++ STSEVYG QD S+ + V PI R Y K++ + +++ Y Q G++ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 328 GFIGNHLSERLLQDDRYDIYGMD---IGS-DAIERLRTKPNFHFIEGDISIHTEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG----MCQDASFNEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAY-GQKGLQFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 537
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: RFBB_NEIGO (dTDP-glucose 4,6-dehydratase OS=Neisseria gonorrhoeae GN=rfbB PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12 Identity = 58/219 (26.48%), Postives = 102/219 (46.58%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA----------KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIGS +V +++N ++ V+ +D + G+ ++L +PR+ + D+ + ++ D + HLA + + + I+TN++GT ++L A KR R ST EVYGD +H D+ + P S Y K A+ L+ + R + + ++ N YGPR + +++ I A+ G+PL V G Q R Sbjct: 16 GFIGSAVVRHIIQNTRDSVVNLDKLTYAGNLESLTDIADNPRYAFEQVDICDRAELDRVFAQYRPDAVMHLAAESHVDRAIGSAGEFIRTNIVGTFDLLEAARAYWQQMPSEKREAFRFHHISTDEVYGD--LHGTDDLFT-ETTPYAPSSPYSASKAAADHLVRAWQRTYRLPSIVSNCSNNYGPRQFPE--KLIPLMILNALSGKPLPVYGDGAQIR 229
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12 Identity = 63/217 (29.03%), Postives = 103/217 (47.47%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+ + + EV +D GS D + + P F + D+ E + + D I L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP +D S V PI R Y K++ + +++ Y +Q G+ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 327 GFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 536
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12 Identity = 63/217 (29.03%), Postives = 103/217 (47.47%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+ + + EV +D GS D + + P F + D+ E + + D I L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP +D S V PI R Y K++ + +++ Y +Q G+ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 327 GFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 536
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12 Identity = 63/217 (29.03%), Postives = 103/217 (47.47%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+ + + EV +D GS D + + P F + D+ E + + D I L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP +D S V PI R Y K++ + +++ Y +Q G+ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 327 GFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLESARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 536
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: RHM1_ARATH (Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana GN=RHM1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12 Identity = 62/217 (28.57%), Postives = 96/217 (44.24%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYG----DPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTRS 607 GFI SH+ ++L+ + + +++V+D + + NL P F+ ++ D+ L+ +D I H A N + K N+ GT +L K G R + ST EVYG D LV + S NP Y K AE L+ Y R +G+ + R N YGP N +++ FI A+RG+ L + G+ RS Sbjct: 16 GFIASHVANRLIRSYPDYKIVVLDKLDYCSNLKNLNPSKHSPNFKFVKGDIASADLVNHLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDALVGNHEASQLLPTNP------YSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGP--NQFPEKLIPKFILLAMRGQVLPIHGDGSNVRS 224
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.473e-12 Identity = 62/217 (28.57%), Postives = 103/217 (47.47%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV------TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESYWGNVNPIG-VRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMN------IDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIG+HL ++L+ + + EV +D GS D + + P F + D+ E + + D + L A+PI Y NP++ + + L ++ + G R++ STSEVYG DP +D S V PI R Y K++ + +++ Y +Q G+ + R FN GPR++ I R ++ I + G P+ + G Q R Sbjct: 327 GFIGNHLSERLLRDGRYEVHGMD---IGS-DAIERLKADPHFHFVEGDIGIHSEWLEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYGMCQDP-DFDEDRSNL-VVGPINKQRWIYSVSKQLLDRVIWAYGQQ-GLRFTLFRPFNWMGPRLDRLDSARIGSSRAITQLILHLVEGTPIRLVDGGAQKR 536
BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: RFFG_HAEIN (dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae GN=rffG PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11 Identity = 56/219 (25.57%), Postives = 100/219 (45.66%), Query Frame = 2 Query: 2 GFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----------RVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQAPGTQTR 604 GFIGS L+ ++ + ++ VI +D + ++ LR+ +PR+ + D+ + +IE D + HLA + ++TN++GT +L +AK + R ST EVYGD + E + +P S Y K + L+ +HR +G+ + I N YG + + +++ I+ A+ G+PL + G Q R Sbjct: 11 GFIGSALIRYIINHTQDFVINIDKLTYAANQSALREVENNPRYVFEKVDICDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLDEAKKTTFRFHHISTDEVYGDLSL---SEPAFTEQSPYHPSSPYSASKAASNHLVQAWHRTYGLPVIITNSSNNYGAYQHAE--KLIPLMISNAVMGKPLPIYGDGQQIR 224 The following BLAST results are available for this feature:
BLAST of CX289268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289268 ID=CX289268; Name=CX289268; organism=Citrus clementina; type=EST; length=608bpback to top |