CX289273

Overview
NameCX289273
Unique NameCX289273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig865 contig Ccv1_Contig865:486..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.247e-74
Identity = 141/190 (74.21%), Postives = 161/190 (84.74%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHGANG--PTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEA--DKKQVYPKLVFEDYMKLYVPLKFQAKEPRFAAMKAVETNVNLGPIATA 559
            ENLGLE GYLK+VF G +   PTF T+VSNY PCPKP+LIKGLRAHTDAGGIILLFQDD VSGLQLLKD +WIDVPP+RHSIVVN+GDQ+EVITNGKYKSV HRV++QT+   RMS+ASFYNPGSDAVI+PAP L+EKEA   KK+ YPK VFEDYMKLYV  KF+AKEPRF AMK ++  ++  PI TA
Sbjct:  130 ENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRVVAQTN-GNRMSIASFYNPGSDAVIFPAPELVEKEAAEKKKETYPKFVFEDYMKLYVRQKFEAKEPRFEAMKTMDAVISSQPIPTA 318          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 4.903e-71
Identity = 133/180 (73.89%), Postives = 151/180 (83.89%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHG-ANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMKLYVPLKFQAKEPRFAAMKAVETNVN 538
            ENLGLE GYL K F G A  PTF T+VS+Y PCP+PDL+KGLRAHTDAGGIILLFQDD V GLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVITNG+YKSV HRV++QTD   RMS+ASFYNPGSDAVI PAPAL+ KE +    YPK VFEDYMKLYV  KF+AKEPRF A K++ET  +
Sbjct:  139 ENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVMHRVVAQTD-GNRMSIASFYNPGSDAVISPAPALV-KEEEAVVAYPKFVFEDYMKLYVRHKFEAKEPRFEAFKSMETETS 316          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.092e-70
Identity = 132/180 (73.33%), Postives = 152/180 (84.44%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHG-ANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMKLYVPLKFQAKEPRFAAMKAVETNVN 538
            ENLGLE GYL K F G A  PTF T+VS+Y PCP+PDL++GLRAHTDAGGIILLFQDD+V GLQLLKDG+W+DVPP+RHSIVVNLGDQ+EVITNG+YKSV HRV++QTD   RMS+ASFYNPGSDAVI PAPAL+ KE +    YPK VFEDYMKLYV  KF+AKEPRF A K++ET  +
Sbjct:  139 ENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGRYKSVIHRVVAQTD-GNRMSIASFYNPGSDAVISPAPALV-KEEEAVVAYPKFVFEDYMKLYVRHKFEAKEPRFEAFKSMETETS 316          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.208e-69
Identity = 133/189 (70.37%), Postives = 149/189 (78.84%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREG-RMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMKLYVPLKFQAKEPRFAAMKAVETNVNLGPIATA*T 565
            ENLGLE GYLKKVFHG  GPTF T+VSNY  CPKP++IKGLRAHTDAGGIILLFQDDKV+GLQLLKDG WIDVPPL HSIV+NLGDQ+EVITNG+YKS+ HRV++Q  +EG RMS+ASFYNPGSDA I PA +L  KE +    YP  VF+DYMKLY  +KFQ KEPRF AMK       L P A   T
Sbjct:  137 ENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQ--KEGNRMSIASFYNPGSDAEISPASSLACKETE----YPSFVFDDYMKLYAGVKFQPKEPRFEAMKNANAVTELNPTAAVET 319          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.288e-52
Identity = 101/176 (57.39%), Postives = 128/176 (72.73%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHG--ANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMKLYVPLKFQAKEPRFAAMKAV 523
            ENLG E G +KK F G   + P F T+VS+Y PCP+ DL+KGLRAHTDAGG+ILLFQDD+V GLQ+LKDG+WIDV PL  +IV+N GDQIEV++NG+YKS  HRV++ T    R S+ASFYNP   A I PA     +EA    +YPK +F DYM +Y   K++ KEPRF A++A+
Sbjct:  132 ENLGFEKGCIKKAFSGDGQHPPFFGTKVSHYPPCPRLDLVKGLRAHTDAGGVILLFQDDQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLA-TSHGNRRSIASFYNPSLKATIAPAAGAATEEAAPPALYPKFLFGDYMDVYAKQKYEPKEPRFEAVRAI 306          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.938e-25
Identity = 52/124 (41.94%), Postives = 87/124 (70.16%), Query Frame = 2
Query:   86 YAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDY 457
            Y PCP+PD + GL  H+D+ G+ +L Q + V GLQ+ KDG+W+ V PL ++ +VN+GD +E+ITNG Y+S+EHR +  +++E R+S+A+F+N G    + PA +L+E++  K   + +L  ++Y
Sbjct:  218 YPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKE-RLSIATFHNVGMYKEVGPAKSLVERQ--KVARFKRLTMKEY 338          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.183e-24
Identity = 60/150 (40.00%), Postives = 93/150 (62.00%), Query Frame = 2
Query:    8 LGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDY 457
            LG+E G LK+   G +   ++ +++ Y PCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD +WID   + +++V+++GDQIE+++NGKYK+V HR     D+  RMS   F  P +D V+ P P L++ E   K  Y    F+DY
Sbjct:  181 LGVEGGVLKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKT-RMSWPVFLEPPADTVVGPLPQLVDDENPPK--YKAKKFKDY 325          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: FLS_MALDO (Flavonol synthase/flavanone 3-hydroxylase OS=Malus domestica GN=FLS PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.889e-22
Identity = 60/151 (39.74%), Postives = 90/151 (59.60%), Query Frame = 2
Query:    8 LGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYM 460
            LGLE   LKK   G N   ++ +++ Y PCP+PDL  G+ AHTD   + +L  +D V GLQ  KDG+W DV  + +++V+++GDQ+E+++NGKY SV HR     D+  R+S   F  P +D V+ P P L+   A  +  Y    + DY+
Sbjct:  183 LGLEGQELKKAAGGDN-LEYLLKINYYPPCPRPDLALGVVAHTDMSTVTILVPND-VQGLQACKDGRWYDVKYIPNALVIHIGDQMEIMSNGKYTSVLHRTTVNKDKT-RISWPVFLEPPADHVVGPHPQLV--NAVNQPKYKTKKYGDYV 328          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.179e-22
Identity = 58/151 (38.41%), Postives = 90/151 (59.60%), Query Frame = 2
Query:    8 LGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYM 460
            LGLE G+      G +   ++ +++ Y PCP+PDL  G+ AHTD   I +L  ++ V GLQ+ KDG W DV  + ++++V++GDQ+E+++NGKYKSV HR     D+  RMS   F  P S+  + P P LL +    K  +    ++DY+
Sbjct:  194 LGLE-GHEMIEAAGGDEIVYLLKINYYPPCPRPDLALGVVAHTDMSYITILVPNE-VQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGKYKSVYHRTTVNKDKT-RMSWPVFLEPPSEHEVGPIPKLLSEANPPK--FKTKKYKDYV 339          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.078e-21
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 2
Query:    8 LGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYM 460
            +GLE   LKK   G +   ++ +++ Y PCP+PDL  G+ AHTD   I +L  ++ V GLQ+ KD  W DV  + +++++++GDQIE+++NGKYKSV HR     D+  RMS   F  P  + +  P   L+  E   K  +    ++DY+
Sbjct:  183 IGLEKHELKKA-SGGDDLIYMLKINYYPPCPRPDLALGVVAHTDMSAITILVPNE-VQGLQVHKDDHWYDVKYIPNALIIHIGDQIEIMSNGKYKSVYHRTTVNKDKT-RMSWPVFLEPPPELLTGPISKLITDENPAK--FKTKKYKDYV 328          
The following BLAST results are available for this feature:
BLAST of CX289273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
ACCO_DENCR1.247e-7474.211-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO1_ORYSI4.903e-7173.891-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_ORYSJ1.092e-7073.331-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
ACCO1_BRAJU1.208e-6970.371-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCO_MUSAC2.288e-5257.391-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
SRG1_ARATH6.938e-2541.94Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_CITUN1.183e-2440.00Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
FLS_MALDO1.889e-2239.74Flavonol synthase/flavanone 3-hydroxylase OS=Malus... [more]
FLS_PETHY7.179e-2238.41Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_PETCR6.078e-2137.09Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]

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Properties
Property NameValue
Genbank descriptionC02011B04SK IF1 Citrus clementina cDNA clone C02011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289273 ID=CX289273; Name=CX289273; organism=Citrus clementina; type=EST; length=573bp
CGAGAATCTTGGATTAGAGAACGGGTACTTGAAAAAGGTCTTTCATGGGG
CAAACGGGCCAACCTTTGTTACCGAAGTTAGCAACTACGCACCATGCCCT
AAGCCAGATTTGATCAAGGGTCTCCGGGCTCACACCGACGCCGGCGGCAT
CATCTTGCTCTTCCAGGATGACAAAGTCAGCGGCCTTCAGCTTCTTAAAG
ATGGCCAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAAC
CTCGGTGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGA
GCACAGAGTGATTTCTCAAACCGACCGCGAGGGCCGGATGTCCCTAGCTT
CATTCTACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTG
CTTGAAAAAGAAGCTGACAAGAAACAAGTGTACCCAAAACTTGTTTTTGA
GGACTACATGAAGCTCTATGTTCCCCTCAAGTTCCAGGCCAAGGAACCAA
GATTTGCAGCCATGAAAGCTGTGGAAACTAATGTTAACTTGGGTCCAATT
GCCACCGCTTAAACTATTATTTT
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