CX289273

Overview
NameCX289273
Unique NameCX289273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig865 contig Ccv1_Contig865:486..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.823e-18
Identity = 51/152 (33.55%), Postives = 83/152 (54.61%), Query Frame = 2
Query:    8 LGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIY-PAPALLEKEADKKQVYPKLVFEDYM 460
            LGLE G L+K   G        +++ Y  CP+P+L  G+ AHTD   +  +  +  V GLQL  +GQW+    + +SI++++GD IE+++NGKYKS+ HR +   ++  R S A F  P  + +I  P P  + +    +  +P   F  +M
Sbjct:  195 LGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGQWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGVVNKEKV-RFSWAIFCEPPKEKIILKPLPETVTEAEPPR--FPPRTFAQHM 342          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18
Identity = 50/136 (36.76%), Postives = 82/136 (60.29%), Query Frame = 2
Query:   56 GPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYM 460
            G   V ++++Y  CP+PD   GL AHTD+  + +L+Q++  +GLQ+ +D   W+  PP+  S+VVN+GD + ++TNG + SV HR      R  R S+A  + P SD +I P P L++    +  +YP L ++ Y+
Sbjct:  200 GTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQNN-TAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVNHVR-SRFSMAYLWGPPSDIMISPLPKLVDPL--QSPLYPSLTWKQYL 331          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 49/153 (32.03%), Postives = 88/153 (57.52%), Query Frame = 2
Query:    8 LGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIY-PAPALLEKEADKKQVYPKLVFEDYMK 463
            LGL+ G L+K   G        +++ Y  CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    + +SIV+++GD +E+++NGKYKS+ HR +   ++  R+S A F  P  + +I  P P  + +  D+  ++P   F ++++
Sbjct:  195 LGLDEGRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPNSIVMHIGDTLEILSNGKYKSILHRGMVNKEKV-RISWAVFCEPPKEKIILKPLPETVSE--DEPAMFPPRTFAEHIQ 343          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: FL3H_HORVU (Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 2
Query:   77 VSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYP 388
            V+ Y  CP+PDL  GL+ HTD G I LL Q D V GLQ  +DG   WI V P+  + VVNLGD    ++NG++K+ +H+ +   +   R+S+A+F NP  DA ++P
Sbjct:  202 VNFYPRCPQPDLTLGLKRHTDPGTITLLLQ-DLVGGLQATRDGGKNWITVQPISGAFVVNLGDHGHFMSNGRFKNADHQAVVNGE-SSRLSIATFQNPAPDARVWP 305          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 51/131 (38.93%), Postives = 76/131 (58.02%), Query Frame = 2
Query:   86 YAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNP---GSDAVIYPAPALLEKEADKKQVYPKLVFEDYMKLY 469
            Y PCP+PDL  GL  H+D   + +L QD  + GLQ+L D  W+DVPP+  ++VVN+GD +++ITN K+ SVEHRV++      R+S+A F++     +  V  P   +L +E      Y      +Y K Y
Sbjct:  223 YPPCPQPDLTLGLTKHSDNSFLTILLQDH-IGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANV-AGPRISVACFFSSYLMANPRVYGPIKEILSEENPPN--YRDTTITEYAKFY 349          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17
Identity = 50/153 (32.68%), Postives = 85/153 (55.56%), Query Frame = 2
Query:    8 LGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIY-PAPALLEKEADKKQVYPKLVFEDYMK 463
            LGLE   L+K   G        +++ Y  CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    +  SIV+++GD +E+++NGKYKS+ HR +   ++  R+S A F  P  D ++  P P ++  E+  K  +P   F  +++
Sbjct:  191 LGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKV-RISWAVFCEPPKDKIVLKPLPEMVSVESPAK--FPPRTFAQHIE 339          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G3OX1_ARATH (Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.073e-17
Identity = 48/132 (36.36%), Postives = 83/132 (62.88%), Query Frame = 2
Query:   74 EVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG-QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRV-ISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMK 463
            ++++Y  CP+PD   GL AHTD+  + +L+Q++  +GLQ+ +D   W+ VPP   S+VVN+GD   +++NG +KSV HR  ++QT    R+S+A  + P SD  I P P L+     +  +Y  + +++Y++
Sbjct:  213 QLNHYPVCPEPDRAMGLAAHTDSTLLTILYQNN-TAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQT--RARLSVAFLWGPQSDIKISPVPKLVSPV--ESPLYQSVTWKEYLR 339          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 46/128 (35.94%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    8 LGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPA 391
            LGLE G L+K   G        +++ Y  CP+P+L  G+ AHTD   +  +  +  V GLQL  +G+W+    + +SI++++GD IE+++NGKYKS+ HR +   ++  R+S A F  P  + +I  A
Sbjct:  197 LGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKEKV-RISWAVFCEPPKEKIILKA 322          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: ACCH3_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 4 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.121e-17
Identity = 51/155 (32.90%), Postives = 87/155 (56.13%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPG---SDAVIYPAPALLEKEADKKQVYPKLVFEDY 457
            E LGLE  +L  +   + G   ++    Y PCP+PDL  G   H+D   + +L  D ++ GLQ+ ++G W DVP +  ++++N+GD +++ITN K+ S+EHRV++      R+S+A F+  G   +  +  P   L+ +E   K  Y +   +DY
Sbjct:  201 EALGLEPNHLNDM-DCSKGLLMLSHY--YPPCPEPDLTLGTSQHSDNSFLTVLLPD-QIEGLQVRREGHWFDVPHVSGALIINIGDLLQLITNDKFISLEHRVLANRATRARVSVACFFTTGVRPNPRMYGPIRELVSEENPPK--YRETTIKDY 349          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.954e-17
Identity = 49/153 (32.03%), Postives = 84/153 (54.90%), Query Frame = 2
Query:    8 LGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSD-AVIYPAPALLEKEADKKQVYPKLVFEDYMK 463
            LGLE G L+K   GA       +++ Y  CP+P+L  G  AHTD   +  +  +  V GLQL  + +W+    + +SI++++GD +E+++NGKYKS+ HR +   ++  R+S A F  P  +  V+ P P  + +    +  +P   F  ++K
Sbjct:  197 LGLEKGRLEKEVGGAEDLIVQMKINFYPKCPQPELALGWEAHTDVSALTFILHN-MVPGLQLFYEDKWVTAKCVPNSIIMHIGDTLEILSNGKYKSILHRGLVNKEKV-RISWAVFCEPPKEKIVLQPLPETVSEVEPPR--FPPRTFAQHLK 345          
The following BLAST results are available for this feature:
BLAST of CX289273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
LDOX_PETHY2.823e-1833.55Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
G3OX2_ARATH3.687e-1836.76Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
LDOX_MALDO4.816e-1832.03Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
FL3H_HORVU4.816e-1844.34Naringenin,2-oxoglutarate 3-dioxygenase OS=Hordeum... [more]
ACCH1_ARATH4.816e-1838.931-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
LDOX_ARATH1.073e-1732.68Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
G3OX1_ARATH1.073e-1736.36Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis th... [more]
LDOX_VITVI1.401e-1735.94Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
ACCH3_ARATH3.121e-1732.901-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
LDOX_PERFR6.954e-1732.03Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]

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Properties
Property NameValue
Genbank descriptionC02011B04SK IF1 Citrus clementina cDNA clone C02011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289273 ID=CX289273; Name=CX289273; organism=Citrus clementina; type=EST; length=573bp
CGAGAATCTTGGATTAGAGAACGGGTACTTGAAAAAGGTCTTTCATGGGG
CAAACGGGCCAACCTTTGTTACCGAAGTTAGCAACTACGCACCATGCCCT
AAGCCAGATTTGATCAAGGGTCTCCGGGCTCACACCGACGCCGGCGGCAT
CATCTTGCTCTTCCAGGATGACAAAGTCAGCGGCCTTCAGCTTCTTAAAG
ATGGCCAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAAC
CTCGGTGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGA
GCACAGAGTGATTTCTCAAACCGACCGCGAGGGCCGGATGTCCCTAGCTT
CATTCTACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTG
CTTGAAAAAGAAGCTGACAAGAAACAAGTGTACCCAAAACTTGTTTTTGA
GGACTACATGAAGCTCTATGTTCCCCTCAAGTTCCAGGCCAAGGAACCAA
GATTTGCAGCCATGAAAGCTGTGGAAACTAATGTTAACTTGGGTCCAATT
GCCACCGCTTAAACTATTATTTT
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