CX289273

Overview
NameCX289273
Unique NameCX289273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 49/153 (32.03%), Postives = 80/153 (52.29%), Query Frame = 2
Query:    5 NLGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMK 463
            +LG++  Y ++ F   +    +  ++ Y PC KPDL  G   H D   + +L QD  V+GLQ+  + QW  + P   + VVN+GD    ++N +YKS  HR +  ++ E R SLA F  P  D V+ P   LL+    ++  YP   +  +++
Sbjct:  208 SLGVKRDYFREFFEENDS---IMRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDH-VNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESE-RKSLAFFLCPKKDRVVTPPRELLDSITSRR--YPDFTWSMFLE 353          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.507e-16
Identity = 49/153 (32.03%), Postives = 77/153 (50.33%), Query Frame = 2
Query:    5 NLGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMK 463
            +LG+   Y +  F   +    +  +++Y PC  PDL  G   H D   + +L QD  V+GLQ+  D QW  + P   + VVN+GD    ++NG +KS  HR +   +   R S+A F  P  D V+ P   +LEK   +K  YP   +  +++
Sbjct:  206 SLGVNRDYFRGFFEENDS---IMRLNHYPPCQTPDLTLGTGPHCDPSSLTILHQDH-VNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRE-SARKSMAFFLCPKKDKVVKPPSDILEKMKTRK--YPDFTWSMFLE 351          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: ACCH2_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 2 OS=Arabidopsis thaliana GN=At1g06640 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.887e-16
Identity = 42/127 (33.07%), Postives = 73/127 (57.48%), Query Frame = 2
Query:   86 YAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYN---PGSDAVIYPAPALLEKEADKKQVYPKLVFEDY 457
            + PCP+PDL  G   H+D G  + +   D + GLQ+ ++G W DVP +  ++++N+GD +++ITN K+ S++HRV++      R+S+A F++     +  V  P   L+ +E   K  Y +    DY
Sbjct:  226 FPPCPEPDLTFGTSKHSD-GSFLTVLLPDNIEGLQVCREGYWFDVPHVPGALIINIGDLLQLITNDKFISLKHRVLANRATRARVSVACFFHTHVKPNPRVYGPIKELVSEENPPK--YRETTIRDY 349          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: GSL_ARATH (Probable 2-oxoacid dependent dioxygenase OS=Arabidopsis thaliana GN=GSL-OH PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.688e-16
Identity = 45/119 (37.82%), Postives = 72/119 (60.50%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFY 358
            E LGL   +LK++   A G   +     + PCP+P+   G   HTD   + +L  D+   GLQ+L DG WIDVPP   +++ N+GD +++I+N K+ S+EHR+++    E R+S+A F+
Sbjct:  191 EALGLSPNHLKEM-DCAKGLWMLCHC--FPPCPEPNRTFGGAQHTDRSFLTILLNDNN-GGLQVLYDGYWIDVPPNPEALIFNVGDFLQLISNDKFVSMEHRILANGGEEPRISVACFF 305          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.004e-15
Identity = 47/134 (35.07%), Postives = 80/134 (59.70%), Query Frame = 2
Query:   77 VSNYAPCPKPDLIK----GLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMK 463
            +++Y PCP+   +     G   HTD   II + + +  SGLQ+ L DG W+ VPP + S  +N+GD ++V+TNG++KSV+HRV++ T +  R+S+  F  P     I P P+++ K   ++ +Y +  + +Y K
Sbjct:  182 LNHYPPCPEVQALNRNLVGFGEHTDPQ-IISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTTK-SRLSMIYFGGPALSENIAPLPSVMLK--GEECLYKEFTWCEYKK 311          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 36/77 (46.75%), Postives = 57/77 (74.03%), Query Frame = 2
Query:   86 YAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVIS 316
            Y  CP+P+L  G   H+D+G + +L QD ++ GLQ+L + QWIDVP +  ++V+N+ D +++ITN K+KSVEHRV++
Sbjct:  253 YPACPQPELTFGTSKHSDSGFLTILMQD-QIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLA 328          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 56/175 (32.00%), Postives = 86/175 (49.14%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMKLYVPLKFQAKEPRFAAMKAVE 526
            E+LG+   + ++ F G +    +  ++ Y PC +P    G   H D   + +L QD+ V GLQ+  +G+W  + P   + VVN+GD    ++NG+YKS  HR +  + R  R SLA F  P  D V+ P   L+  +A   + YP   +         L F  K  R A MK +E
Sbjct:  184 ESLGVGRAHYRRFFEGNDS---IMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNS-RVPRKSLAFFLCPEMDKVVAPPGTLV--DASNPRAYPDFTWRSL------LDFTQKHYR-ADMKTLE 344          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 45/120 (37.50%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   53 NGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKE 412
            +G   V +++ Y P P P    GL  H D   + +L     V GL++   G WI V P+ +S+V+N G Q+EV+TNG  K+VEHR  +    E R+S+ASF  P  D V+ PA   + ++
Sbjct:  182 SGGRVVVDINYYPPSPNPSRTLGLPPHCDRDLMTVLLPG-AVPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNF-AEPRLSVASFIVPADDCVVGPAEEFVSED 299          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.983e-15
Identity = 56/175 (32.00%), Postives = 86/175 (49.14%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMKLYVPLKFQAKEPRFAAMKAVE 526
            E+LG+   + ++ F G +    +  ++ Y PC +P    G   H D   + +L QD+ V GLQ+  +G+W  + P   + VVN+GD    ++NG+YKS  HR +  + R  R SLA F  P  D V+ P   L+  +A   + YP   +         L F  K  R A MK +E
Sbjct:  184 ESLGVGRAHYRRFFEGNDS---IMRLNYYPPCQRPLETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNS-RVPRKSLAFFLCPEMDKVVAPPGTLV--DAANPRAYPDFTWRSL------LDFTQKHYR-ADMKTLE 344          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.508e-15
Identity = 55/159 (34.59%), Postives = 80/159 (50.31%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQ--LLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMKLYV 472
            E LGL+ GY    F        +   + Y PCP P    G   H D   I LL QD  + GLQ  ++KD  WI V P+  + VVNLG  ++VITN K++   HRV++   R+ R+S+A+   P     I PA  LL +  D   +Y    + ++  +Y+
Sbjct:  178 EGLGLKLGY----FDNELSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLITLLQQD--LPGLQQLIVKDATWIAVQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRD-RVSIATLIGPDYSCTIEPAKELLNQ--DNPPLYKPYSYSEFADIYL 327          
The following BLAST results are available for this feature:
BLAST of CX289273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GAOX1_ARATH3.451e-1632.03Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
GAOX2_ARATH4.507e-1632.03Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
ACCH2_ARATH5.887e-1633.071-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GSL_ARATH7.688e-1637.82Probable 2-oxoacid dependent dioxygenase OS=Arabid... [more]
G2OX_PHACN1.004e-1535.07Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
DV4H_CATRO1.713e-1546.75Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
GAO1A_WHEAT2.921e-1532.00Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
IDS2_HORVU3.816e-1537.50Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
GAO1D_WHEAT4.983e-1532.00Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
HY6H_HYONI6.508e-1534.59Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]

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Properties
Property NameValue
Genbank descriptionC02011B04SK IF1 Citrus clementina cDNA clone C02011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289273 ID=CX289273; Name=CX289273; organism=Citrus clementina; type=EST; length=573bp
CGAGAATCTTGGATTAGAGAACGGGTACTTGAAAAAGGTCTTTCATGGGG
CAAACGGGCCAACCTTTGTTACCGAAGTTAGCAACTACGCACCATGCCCT
AAGCCAGATTTGATCAAGGGTCTCCGGGCTCACACCGACGCCGGCGGCAT
CATCTTGCTCTTCCAGGATGACAAAGTCAGCGGCCTTCAGCTTCTTAAAG
ATGGCCAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAAC
CTCGGTGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGA
GCACAGAGTGATTTCTCAAACCGACCGCGAGGGCCGGATGTCCCTAGCTT
CATTCTACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTG
CTTGAAAAAGAAGCTGACAAGAAACAAGTGTACCCAAAACTTGTTTTTGA
GGACTACATGAAGCTCTATGTTCCCCTCAAGTTCCAGGCCAAGGAACCAA
GATTTGCAGCCATGAAAGCTGTGGAAACTAATGTTAACTTGGGTCCAATT
GCCACCGCTTAAACTATTATTTT
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