CX289273

Overview
NameCX289273
Unique NameCX289273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig865 contig Ccv1_Contig865:486..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 55/175 (31.43%), Postives = 86/175 (49.14%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMKLYVPLKFQAKEPRFAAMKAVE 526
            E+LG+   + ++ F G +    +  ++ Y PC +P    G   H D   + +L QD+ V GLQ+  +G+W  + P   + VVN+GD    ++NG+YKS  HR +  + +  R SLA F  P  D V+ P   L+  +A   + YP   +         L F  K  R A MK +E
Sbjct:  184 ESLGVGRAHYRRFFEGNDS---IMRLNYYPPCQRPMETLGTGPHCDPTSLTILHQDN-VGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNS-KVPRKSLAFFLCPEMDKVVAPPGTLV--DAANPRAYPDFTWRSL------LDFTQKHYR-ADMKTLE 344          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14
Identity = 46/138 (33.33%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   68 VTEVSNYAPCPKPDL-------IKGLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDY 457
            +  +++Y PCP  +        + G   HTD   II + + +  SGLQ+ L DG WI VPP   S   N+GD ++V+TNG++KSV HRV++   ++ R+S+  F  P     I P   L++ E ++  +Y +  + +Y
Sbjct:  169 ILRLNHYPPCPLSNKKTNGGKNVIGFGEHTDPQ-IISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANC-KKSRVSMIYFAGPSLTQRIAPLTCLIDNEDER--LYEEFTWSEY 302          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.894e-14
Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 2
Query:   77 VSNYAPCPKPDL----IKGLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDY 457
            V++Y  CP+  +    + G   HTD   II + + +  SG Q+ L+DG WI VPP   S  +N+GD ++V+TNG++KSV HRV++    + R+S+  F  P     I P P+L++    K+ +Y +  + +Y
Sbjct:  178 VNHYPACPELAINGENLIGFGEHTDPQ-IISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLA-NGIDPRLSMIYFCGPPLSEKIAPLPSLMK---GKESLYKEFTWFEY 304          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.230e-14
Identity = 43/114 (37.72%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  119 GLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDY 457
            G   HTD   II + + +  +GLQ+ +KDG W+ VPP   S  +N+GD ++V+TNG++KSV+HRV++ T R  R+S+  F  P     I P P L+ ++ D   +Y +  +  Y
Sbjct:  203 GFGEHTDPQ-IISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADT-RRSRISMIYFGGPPLSQKIAPLPCLVPEQDD--WLYKEFTWSQY 312          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 2
Query:   86 YAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYM 460
            Y  CP P    GL AHTD+G    + Q   V GLQL + G  +W+ VP +  ++VVN+GD  +++TNG++ SV HR +   D + R+SL  F  P +   + P   L E  A     Y  + + +YM
Sbjct:  214 YPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSD-RISLGYFLGPPAHVKVAP---LREALAGTPAAYRAVTWPEYM 335          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 2
Query:   86 YAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYM 460
            Y  CP P    GL AHTD+G    + Q   V GLQL + G  +W+ VP +  ++VVN+GD  +++TNG++ SV HR +   D + R+SL  F  P +   + P   L E  A     Y  + + +YM
Sbjct:  214 YPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSD-RISLGYFLGPPAHVKVAP---LREALAGTPAAYRAVTWPEYM 335          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 45/127 (35.43%), Postives = 68/127 (53.54%), Query Frame = 2
Query:   86 YAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG--QWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYM 460
            Y  CP P    GL AHTD+G    + Q   V GLQL + G  +W+ VP +  ++VVN+GD  +++TNG++ SV HR +   + + R+SL  F  P +   + P   L E  A     Y  + + +YM
Sbjct:  214 YPKCPDPKRALGLIAHTDSGFFTFVLQS-LVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESD-RISLGYFLGPPAHVKVAP---LREALAGTPAAYRAVTWPEYM 335          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.094e-13
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 2
Query:    2 ENLGLENGYLKKVFHGANGPTFVTEVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNP 364
            + + + + Y + +F   N       ++ Y P      + GL  HTD   + +L QD ++ GL+L  +GQWI V P   ++ VN+GD  + ++NG Y+SV HRVIS  + E RMS+A F  P
Sbjct:  176 KQVNVSSEYFENIFELENS---FLRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQD-QIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIE-RMSIAFFVCP 291          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 43/134 (32.09%), Postives = 78/134 (58.21%), Query Frame = 2
Query:   74 EVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLL----KDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHR-VISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYM 460
            ++++Y  CP P L  GL  HTD+  + +L+Q + + GL++     +  +WI V P+  S+VV +GD   +I+NG+++S  HR V+++T    R+S A F  P  +  I P    L  + +   +Y +L++E+Y+
Sbjct:  207 QLNSYPVCPDPHLAMGLAPHTDSSLLTILYQGN-IPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHH--RVSAAYFAGPPKNLQIGP----LTSDKNHPPIYRRLIWEEYL 333          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  119 GLRAHTDAGGIILLFQDDKVSGLQL-LKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFYNPGSDAVIYPAPALLEKEAD 418
            G   HTD   I LL  +D   GLQ+ +KDG W+DV P   S  V +GD ++V+TNG++KSV+HRV++ T R  R+S+  F  P     I P   L+ K+ D
Sbjct:  198 GFGEHTDPQLISLLRSND-TEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKR-SRISMIYFAGPPLSEKIAPLSCLVPKQDD 296          
The following BLAST results are available for this feature:
BLAST of CX289273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
GAO1B_WHEAT8.500e-1531.43Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
G2OX1_ARATH1.110e-1433.33Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX1_PEA1.894e-1434.85Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX2_ARATH3.230e-1437.72Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3O22_WHEAT7.196e-1436.22Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT7.196e-1436.22Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
G3O23_WHEAT2.094e-1335.43Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
G2OX7_ARATH2.094e-1335.54Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G3OX3_ARATH7.956e-1332.09Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX3_ARATH1.039e-1242.57Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02011B04SK IF1 Citrus clementina cDNA clone C02011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289273 ID=CX289273; Name=CX289273; organism=Citrus clementina; type=EST; length=573bp
CGAGAATCTTGGATTAGAGAACGGGTACTTGAAAAAGGTCTTTCATGGGG
CAAACGGGCCAACCTTTGTTACCGAAGTTAGCAACTACGCACCATGCCCT
AAGCCAGATTTGATCAAGGGTCTCCGGGCTCACACCGACGCCGGCGGCAT
CATCTTGCTCTTCCAGGATGACAAAGTCAGCGGCCTTCAGCTTCTTAAAG
ATGGCCAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAAC
CTCGGTGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGA
GCACAGAGTGATTTCTCAAACCGACCGCGAGGGCCGGATGTCCCTAGCTT
CATTCTACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTG
CTTGAAAAAGAAGCTGACAAGAAACAAGTGTACCCAAAACTTGTTTTTGA
GGACTACATGAAGCTCTATGTTCCCCTCAAGTTCCAGGCCAAGGAACCAA
GATTTGCAGCCATGAAAGCTGTGGAAACTAATGTTAACTTGGGTCCAATT
GCCACCGCTTAAACTATTATTTT
back to top