CX289273

Overview
NameCX289273
Unique NameCX289273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 39/112 (34.82%), Postives = 67/112 (59.82%), Query Frame = 2
Query:   74 EVSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREG-RMSLASFYNPGSDAV-IYPAPALL 403
            +++ Y  CP+P+L  G+ AHTD   +  +  +  V GLQ+L   +W+       +I+V++GD +E+++NG+Y SV HR +   +RE  R+S   F  P  D+V ++P P L+
Sbjct:  235 KINYYPRCPQPELAVGVEAHTDVSALSFILHNG-VPGLQVLHGARWVTARHEPGTIIVHVGDALEILSNGRYTSVLHRGL--VNREAVRISWVVFCEPPPDSVLLHPLPELV 343          
BLAST of CX289273 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 44/151 (29.14%), Postives = 79/151 (52.32%), Query Frame = 2
Query:   77 VSNYAPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQ-WIDVPPLRHSIVVNLGDQIEVITNGKYKSVEHRVISQTDREGRMSLASFY-NPGSDAVIYPAPALLEKEADKKQVYPKLVFEDYMKLYVPLKFQAKEPRFAAMKAV 523
            +++Y  CP+P+   GL AHTD+  + +L Q +   GLQ+ ++   W+ V P    +VVN+GD   +++NGK  SV HR      R  R+S+A  +  P  D  I P   L      +  +Y  + +++Y++    +K++  +    A++ V
Sbjct:  209 LNHYPVCPEPERAMGLAAHTDSTILTILHQSN-TGGLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHTR-SRISIAYLWGGPAGDVQIAPISKLTGPA--EPSLYRSITWKEYLQ----IKYEVFDKAMDAIRVV 351          
The following BLAST results are available for this feature:
BLAST of CX289273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
LDOX_MAIZE3.949e-1234.82Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
G3OX4_ARATH5.702e-1129.14Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC02011B04SK IF1 Citrus clementina cDNA clone C02011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289273 ID=CX289273; Name=CX289273; organism=Citrus clementina; type=EST; length=573bp
CGAGAATCTTGGATTAGAGAACGGGTACTTGAAAAAGGTCTTTCATGGGG
CAAACGGGCCAACCTTTGTTACCGAAGTTAGCAACTACGCACCATGCCCT
AAGCCAGATTTGATCAAGGGTCTCCGGGCTCACACCGACGCCGGCGGCAT
CATCTTGCTCTTCCAGGATGACAAAGTCAGCGGCCTTCAGCTTCTTAAAG
ATGGCCAGTGGATTGATGTGCCCCCATTGCGCCACTCCATTGTTGTCAAC
CTCGGTGACCAAATTGAGGTGATCACCAATGGAAAGTACAAGAGTGTGGA
GCACAGAGTGATTTCTCAAACCGACCGCGAGGGCCGGATGTCCCTAGCTT
CATTCTACAATCCTGGAAGTGATGCTGTGATCTATCCAGCACCAGCATTG
CTTGAAAAAGAAGCTGACAAGAAACAAGTGTACCCAAAACTTGTTTTTGA
GGACTACATGAAGCTCTATGTTCCCCTCAAGTTCCAGGCCAAGGAACCAA
GATTTGCAGCCATGAAAGCTGTGGAAACTAATGTTAACTTGGGTCCAATT
GCCACCGCTTAAACTATTATTTT
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