CX289277

Overview
NameCX289277
Unique NameCX289277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14105 contig Ccv1_Contig14105:472..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.128e-30
Identity = 64/94 (68.09%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 282
            GNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPEVQ+D               + PLPD+DD
Sbjct:  118 GNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDEDD 211          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.282e-30
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE PALAPPE+ +D                  LPD+DDD
Sbjct:  120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETALPDEDDD 214          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_BRUMA (GTP-binding nuclear protein Ran OS=Brugia malayi PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.286e-30
Identity = 64/95 (67.37%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+LARKL GDPNL FV  PALAPPEVQ+D               +  LPDDD+D
Sbjct:  120 GNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.598e-30
Identity = 65/95 (68.42%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+KNRQVKAK VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL GD NL FVE  AL P +V ID               + PLPD+D+D
Sbjct:  128 GNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 222          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 5.598e-30
Identity = 65/95 (68.42%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+KNRQVKAK VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL GD NL FVE  AL P +V ID               + PLPD+D+D
Sbjct:  128 GNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 222          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATALPDEDDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
The following BLAST results are available for this feature:
BLAST of CX289277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
GSP1_CANAL1.128e-3068.09GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
RAN_DANRE3.282e-3065.26GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAN_BRUMA4.286e-3067.37GTP-binding nuclear protein Ran OS=Brugia malayi P... [more]
RAN3_ORYSJ5.598e-3068.42GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI5.598e-3068.42GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN_XENLA1.247e-2965.26GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT1.247e-2965.26GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]
RAN_PONAB1.247e-2965.26GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_MOUSE1.247e-2965.26GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA1.247e-2965.26GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]

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Properties
Property NameValue
Genbank descriptionC02011B08SK IF1 Citrus clementina cDNA clone C02011B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289277 ID=CX289277; Name=CX289277; organism=Citrus clementina; type=EST; length=581bp
GGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAGGTTAC
CTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAAGAGCA
ACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGG
GACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGT
ACAGATTGACTTAGCTGCACAGCAACAACATGAAGCCGAGCTTGCCGCAG
CAGCTAGCCAGCCTCTTCCTGATGACGATGATGATGCATTTGAGTAGAGA
GGAACTGCTTGGACGGGTGTAGGCGCAACCTCTCATACTGCTGCTTGACT
TAAAAATGCTGTTATTTTGGAAATTTTCAACACATGGCGGAGATTTGGTT
ATCAGCGTAGGGGTGACCATCGAGAACAATGGATTATAGTAGTTAGGTTG
TACCTTTAGATACTTGTTGGAGACTCTTTTTATGCTTGTTTTTTTTTGGG
AGTTTTCTTATTACTGGAATGATGTTTCAGTGACGTGGATTATGCCATTC
CAATACTTTTATGCAAAAAAAAAAAAAAAAA
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