CX289277

Overview
NameCX289277
Unique NameCX289277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length581
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQIAQTTALPDEDDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.247e-29
Identity = 62/95 (65.26%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.127e-29
Identity = 61/95 (64.21%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPE+ +D                  LPD+DDD
Sbjct:  120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILMDPSLAAQYEHDLKVASETALPDEDDD 214          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.778e-29
Identity = 61/95 (64.21%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE  ALAPPE+ +D                  LPD+DDD
Sbjct:  120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMSALAPPEIAMDPSLAAQYEHDLKVASETALPDEDDD 214          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.629e-29
Identity = 61/95 (64.21%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPN  FV  PALAPPEV +D               +  LPD+DDD
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVMDPALAAQYEQDLQHAQATALPDEDDD 215          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: GSP1_YARLI (GTP-binding nuclear protein GSP1/Ran OS=Yarrowia lipolytica GN=GSP1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.084e-29
Identity = 62/97 (63.92%), Postives = 71/97 (73.20%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAF 291
            GNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P+L FV +PAL P E  ID               + PLPD+DD  F
Sbjct:  118 GNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPSLEFVATPALRPAETAIDPEVMQAMQKDLEEANAMPLPDEDDADF 214          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_ONCVO (GTP-binding nuclear protein Ran OS=Onchocerca volvulus GN=ran-1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.056e-28
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GN VDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+L RKL GDPNL FV  PALAPPEVQ+D               +  LPDDD+D
Sbjct:  120 GNFVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLVRKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214          
BLAST of CX289277 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.379e-28
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 1
Query:    1 GNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 285
            GNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PAL PPEV++D               +  LPD+D++
Sbjct:  121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATALPDEDEE 215          
The following BLAST results are available for this feature:
BLAST of CX289277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RAN_HUMAN1.247e-2965.26GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
RAN_CHICK1.247e-2965.26GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA1.247e-2965.26GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN1.247e-2965.26GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
RAN_SALSA2.127e-2964.21GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_CARAU2.778e-2964.21GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
RAN_XENTR3.629e-2964.21GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
GSP1_YARLI8.084e-2963.92GTP-binding nuclear protein GSP1/Ran OS=Yarrowia l... [more]
RAN_ONCVO1.056e-2865.26GTP-binding nuclear protein Ran OS=Onchocerca volv... [more]
RAN_DROME1.379e-2862.11GTP-binding nuclear protein Ran OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionC02011B08SK IF1 Citrus clementina cDNA clone C02011B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289277 ID=CX289277; Name=CX289277; organism=Citrus clementina; type=EST; length=581bp
GGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGCAAAGCAGGTTAC
CTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTTCTGCCAAGAGCA
ACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGG
GACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGT
ACAGATTGACTTAGCTGCACAGCAACAACATGAAGCCGAGCTTGCCGCAG
CAGCTAGCCAGCCTCTTCCTGATGACGATGATGATGCATTTGAGTAGAGA
GGAACTGCTTGGACGGGTGTAGGCGCAACCTCTCATACTGCTGCTTGACT
TAAAAATGCTGTTATTTTGGAAATTTTCAACACATGGCGGAGATTTGGTT
ATCAGCGTAGGGGTGACCATCGAGAACAATGGATTATAGTAGTTAGGTTG
TACCTTTAGATACTTGTTGGAGACTCTTTTTATGCTTGTTTTTTTTTGGG
AGTTTTCTTATTACTGGAATGATGTTTCAGTGACGTGGATTATGCCATTC
CAATACTTTTATGCAAAAAAAAAAAAAAAAA
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